View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_high_2 (Length: 524)
Name: NF4223_high_2
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Complemental strand, 34043020 - 34042525
Alignment:
| Q |
8 |
cgaagaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34043020 |
cgaacaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcct |
34042921 |
T |
|
| Q |
108 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042920 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
34042821 |
T |
|
| Q |
208 |
cacaaagcgggagaagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatgacat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34042820 |
cacaaagcgggagaagaatctaacacaacggaacagattcaactcagcaaaatcaacgaaaacaaagcttcaaatcatgaatcgagcatgcaaatggcat |
34042721 |
T |
|
| Q |
308 |
gaattttctcaatgaatcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042720 |
gaattttctcaatgaatcgatgatgaaattcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaat |
34042621 |
T |
|
| Q |
408 |
gtcatgaggggttgtgaaggtgtctgttgcggcgatgaattcggattcgacattgaagtagttctttatgatttcaagttctttcctagtaggaat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042620 |
gtcatgaggggttgtgaaggtgtctgttgcggcgatgaattcggattcgacattgaagtagttctttatgatttcaagttctttcctagtaggaat |
34042525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 4046193 - 4046366
Alignment:
| Q |
8 |
cgaagaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
4046193 |
cgaacaatattacctccagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcct |
4046292 |
T |
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| Q |
108 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
181 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046293 |
cgagaactgaatgtaacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 336 - 491
Target Start/End: Original strand, 4046456 - 4046611
Alignment:
| Q |
336 |
ttcaagaaaacgaagctcgaaatgatgactgaccttggcgattatagaaacagcaagattgcgaaaaagaatgtcatgaggggttgtgaaggtgtctgtt |
435 |
Q |
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||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || | |||||||| ||||| | |
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| T |
4046456 |
ttcaagaaaacaaagctcaaaatgatgactgaccttgacgattacagaaacagcaagattgcgaaaaagaatgtcacgaaagcttgtgaagaagtctgct |
4046555 |
T |
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| Q |
436 |
gcggcgatgaattcggattcgacattgaagtagttctttatgatttcaagttcttt |
491 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4046556 |
gcggcgatgaactcggattcgacattgaagtagttctttatgatatcaagttcttt |
4046611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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