View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_high_22 (Length: 248)
Name: NF4223_high_22
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 1840283 - 1840502
Alignment:
| Q |
19 |
cgttattggtcatgaaagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaa |
118 |
Q |
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| T |
1840283 |
cgttattggtcatgaaagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaa |
1840382 |
T |
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| Q |
119 |
gctactaatttcaacaaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtt |
218 |
Q |
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| T |
1840383 |
gctactaatttcaacaaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtt |
1840482 |
T |
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| Q |
219 |
tacctttcaaccgatcacct |
238 |
Q |
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| T |
1840483 |
tacctttcaaccgatcacct |
1840502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 1832697 - 1832524
Alignment:
| Q |
48 |
atggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccga |
147 |
Q |
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| T |
1832697 |
atggaaaatgttcgggtgtagggtgttgccaaattgatattcatcctaaaatgaggaatgtaagcatacaagcttctaatttcaacact---tcatccaa |
1832601 |
T |
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| Q |
148 |
tttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctt |
224 |
Q |
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| T |
1832600 |
attttgtagctattcatttgttgttaggaatggtagctatgatttttcatccactcatttatcacaaggtttacctt |
1832524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 1866231 - 1866409
Alignment:
| Q |
34 |
aagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaac |
133 |
Q |
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| T |
1866231 |
aagattgattgataatgaaacatgttcgggtatagggtgctgccaagttgatattcctcctaaaatgtggaatataagcatagaagcttataatttcaac |
1866330 |
T |
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| Q |
134 |
aaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcac |
212 |
Q |
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| T |
1866331 |
caaaattcatcactatattgtagctatgcatttgttgtcaagaatggtagctatactttttctaccaatcatttatcac |
1866409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 9164155 - 9164081
Alignment:
| Q |
47 |
aatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
121 |
Q |
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| T |
9164155 |
aatggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtgtacaagct |
9164081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 9158037 - 9157966
Alignment:
| Q |
50 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
121 |
Q |
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| T |
9158037 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtatagaagct |
9157966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 9175990 - 9175916
Alignment:
| Q |
54 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
128 |
Q |
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| T |
9175990 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaatt |
9175916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 9203019 - 9202945
Alignment:
| Q |
54 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
128 |
Q |
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| T |
9203019 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
9202945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 9220487 - 9220418
Alignment:
| Q |
50 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaag |
119 |
Q |
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| T |
9220487 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaag |
9220418 |
T |
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