View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_high_24 (Length: 238)
Name: NF4223_high_24
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48092986 - 48093203
Alignment:
| Q |
1 |
atggcccttgacttcgtcaataatccccaagcatatggtaacgtaacgtaactatactaatcatattcatatgatatacagtaatttaataatggtagca |
100 |
Q |
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| T |
48092986 |
atggcccttgacttcgtcaataatccccaagcatatggtaa-----cgtaactatactaatcatattcatatgatatacagtaatttaataatggtagca |
48093080 |
T |
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| Q |
101 |
taactattagatttatggtaatattaccttct--tatnnnnnnnnnngtattggttatgcaggatttgttacatcacagatagcatgttgtggtcaagga |
198 |
Q |
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| T |
48093081 |
taactattagatttatggtaatattaccttcttatataaaaaaaaaagtattggttatgcaggatttgttacatcacagatagcatgttgtggtcaagga |
48093180 |
T |
|
| Q |
199 |
ccttacaatggacttgggctatg |
221 |
Q |
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|| |||||||||||||||||||| |
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| T |
48093181 |
ccctacaatggacttgggctatg |
48093203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 13324824 - 13324606
Alignment:
| Q |
1 |
atggcccttgacttcgtcaataatccccaagcatatggtaacgtaacgtaactatactaatcatattcatatgatatacagtaatttaata--------- |
91 |
Q |
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| T |
13324824 |
atggcccttgacttcgtcaataatcctcaagcatatggtaac----------tatactaatcatattcatatgatatagagtaatttaatatacaatata |
13324735 |
T |
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| Q |
92 |
atggtagcataactattagatttatggtaatattaccttcttatnnnnnnnnnngtattggttat----gcaggatttgttacatcacagatagcatgtt |
187 |
Q |
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| T |
13324734 |
atggtagcataactattaaatttatggtaatattaccttcttataaaaaaaa--gtattggttatatatgcaggatttgttacatcacagatagcatgtt |
13324637 |
T |
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| Q |
188 |
gtggtcaaggaccttacaatggacttgggct |
218 |
Q |
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| T |
13324636 |
gtggtcaaggaccctacaatggacttgggct |
13324606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 48085138 - 48085198
Alignment:
| Q |
158 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggct |
218 |
Q |
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| T |
48085138 |
caggatttgcaacatcaaaggtagcatgctgtggacaagggccatacaatggacttgggct |
48085198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5666697 - 5666479
Alignment:
| Q |
1 |
atggcccttgacttcgtcaataatccccaagcatatggtaacgtaacgtaactatactaatcatattcatatgatatacagtaatttaata--------- |
91 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
5666697 |
atggcccttgacttcgtcaataatcctcaagcatatggtaac----------tatactaatcatattcatatgatatagagtaatttaatatacaatata |
5666608 |
T |
|
| Q |
92 |
atggtagcataactattagatttatggtaatattaccttcttatnnnnnnnnnngtattggttat----gcaggatttgttacatcacagatagcatgtt |
187 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5666607 |
atggtagcataactattaaatttatggtaatattaccttcttataaaaaaaa--gtattggttatatatgcaggatttgttacatcacagatagcatgtt |
5666510 |
T |
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| Q |
188 |
gtggtcaaggaccttacaatggacttgggct |
218 |
Q |
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| T |
5666509 |
gtggtcaaggaccctacaatggacttgggct |
5666479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 35376420 - 35376369
Alignment:
| Q |
158 |
caggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatgg |
209 |
Q |
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| T |
35376420 |
caggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgg |
35376369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 6339286 - 6339218
Alignment:
| Q |
154 |
tatgcaggatttgttacatcacagatagcatgttgtggtcaaggaccttacaatggacttgggctatgt |
222 |
Q |
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| T |
6339286 |
tatgcaggatttgaaacatcaaaacaagcatgttgtggtcaaggaccattcaatggagttggactatgt |
6339218 |
T |
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