View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_high_3 (Length: 502)
Name: NF4223_high_3
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 6352945 - 6353423
Alignment:
| Q |
11 |
catcatcatcaaattgatttagtcaattctacacttttaatatgttcatatcataccagctataaccgccatgaatccaggagattcctattctaaaatc |
110 |
Q |
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| T |
6352945 |
catcatcatcaaattgatttagtcaattctacacttttaatatgttcatatcataccagctataaccgccatgaatccaggagattcctattctaaaatc |
6353044 |
T |
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| Q |
111 |
atattattttatctactcattataatgctgtttaatcgggttt-gtttgaatcaattttaagattctattttaaaatacacacatatattcttgatagaa |
209 |
Q |
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| T |
6353045 |
aaattattttatctactcattataatgctgtttaatcggtttttgtttgaatcaattttaagattctattttaaaatacacacatatattcttgatagaa |
6353144 |
T |
|
| Q |
210 |
aaacaaaaatatacacatatattttgttcgttacatagaagaatataaaattagagattgatccatgaacataactcaattgctatagataatacattgt |
309 |
Q |
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| T |
6353145 |
aaacaaaaacatacacatatattttgttcgttacatagaagaatataaaattagagattaattcatgaacataactcaattgctatagataatacattgt |
6353244 |
T |
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| Q |
310 |
tatatgtaagattgaaattcaacactgaacgccccacttaattcaccttaataggagaattctaatcactaacatactta--aaaagaat--aattaaag |
405 |
Q |
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| T |
6353245 |
tatatgtaagattgagattcaactccgagcgtcccacttaattcaccttaatatgagaattttagtcactaacatacttaacaaaaaaataaaattagag |
6353344 |
T |
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| Q |
406 |
atcaatttaattgagtttagtggaaggacctacgatgtgacagtatgacgaattaaaattagagtttaggaagaggtat |
484 |
Q |
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| T |
6353345 |
atcaatttaattgagtttagtggaaggacctacaatgtgacagtatgacgaattaaaattagagtttaggaagaggtat |
6353423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 6339224 - 6339279
Alignment:
| Q |
24 |
ttgatttagtcaattctacacttttaatatgttcatatcataccagctataaccgc |
79 |
Q |
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| T |
6339224 |
ttgattaagtcaattctacaatattaatatgttcatatcttaccaactataaccgc |
6339279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 6330518 - 6330590
Alignment:
| Q |
24 |
ttgatttagtcaattctacacttttaatatgttcatatcataccagctataaccgccatgaatccaggagattcct |
99 |
Q |
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| T |
6330518 |
ttgattcagtcaattctacaattttaat---ttcatatcttaccaactataaccgcaatagatccaggagattcct |
6330590 |
T |
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