View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_high_6 (Length: 438)
Name: NF4223_high_6
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 32067622 - 32067485
Alignment:
| Q |
282 |
atgatttgtttaattgtggcatggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtc |
381 |
Q |
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| T |
32067622 |
atgatttgtttaattgtggcgtggtacatgcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtt |
32067523 |
T |
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| Q |
382 |
tatccatagcaacattccaaaacccagcaccagatgca |
419 |
Q |
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| T |
32067522 |
tatccatagcaacattccaaaatccagcaccagatgca |
32067485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 282 - 419
Target Start/End: Complemental strand, 32090637 - 32090500
Alignment:
| Q |
282 |
atgatttgtttaattgtggcatggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtc |
381 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32090637 |
atgatttgtttaattgtggcgtggtacatgcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtt |
32090538 |
T |
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| Q |
382 |
tatccatagcaacattccaaaacccagcaccagatgca |
419 |
Q |
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| T |
32090537 |
tatccatagcaacattccaaaatccagcaccagatgca |
32090500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 32070563 - 32070457
Alignment:
| Q |
312 |
cagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaa--ctatagccgtctatccatagcaacattccaaaacccagc |
409 |
Q |
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| T |
32070563 |
cagtttctaagtaatggacggttcaaaaatcctgatcaccaagcagtggtaaattccaattctacagctgtttatccatagcaacattccaaaatccagc |
32070464 |
T |
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| Q |
410 |
accagat |
416 |
Q |
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||||||| |
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| T |
32070463 |
accagat |
32070457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 32070647 - 32070608
Alignment:
| Q |
224 |
attactttaatcattttatgatttgctgctattgcatggg |
263 |
Q |
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| T |
32070647 |
attactttaatcattttatgatttgctgctattgcatggg |
32070608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 32067758 - 32067708
Alignment:
| Q |
166 |
tcacacttcacgtggccaatttaaattttcacaaatctttgaaaatggttt |
216 |
Q |
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| T |
32067758 |
tcacatttcacgtggccaatttaaattttcgcaaatcattgaaaatggttt |
32067708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 32070983 - 32070921
Alignment:
| Q |
82 |
aatactaaaattattagaagggatcccggaagaaattttgtagactttgaaatcttttttgtca |
145 |
Q |
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| T |
32070983 |
aatactaaaattattagaagggattcctcaag-atttgtgtagactttgaaaacttttttgtca |
32070921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 23307624 - 23307506
Alignment:
| Q |
301 |
catggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtctatccatagcaacattcca |
400 |
Q |
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|||||| ||| |||||| ||||||||||||||||||| || ||||||||| |||||||||||||||| ||| || ||| ||||| | ||||||||||| |
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| T |
23307624 |
catggtgcatgcagtatttaagtaatggacggttcaagaaagctgatcacagggcagtggtgaattccagctacagtcgtttatccgttgcaacattcca |
23307525 |
T |
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| Q |
401 |
aaacccagcaccagatgca |
419 |
Q |
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| | |||||| |||||||| |
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| T |
23307524 |
atatccagcaacagatgca |
23307506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 419
Target Start/End: Original strand, 8625077 - 8625172
Alignment:
| Q |
324 |
aatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtctatccatagcaacattccaaaacccagcaccagatgca |
419 |
Q |
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|||||| ||||||| ||||| |||||||||||||| ||||| | ||| ||| |||| |||| ||||| ||||||||||||||| ||| ||||||| |
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| T |
8625077 |
aatggaaggttcaagaatgcagatcaccaagcagtagtgaacccaaaccataaccgtttatcaatagctacattccaaaacccatcacaagatgca |
8625172 |
T |
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