View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_10 (Length: 363)
Name: NF4223_low_10
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 33903091 - 33902755
Alignment:
| Q |
19 |
tctctgagacagttgatctgaaacttaatcttcaaaccaaggaagatctgaatgagaagagtgcttcaaaggagaagaccctccttaaggaccctgctaa |
118 |
Q |
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| T |
33903091 |
tctctgagacagttgatctgaagcttaatcttcaaaccaaggaagatctgaatgagaagagtgcttcaaaggagaagaccctccttaaggaccctgctaa |
33902992 |
T |
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| Q |
119 |
gccaccagctaagtaagttttcccaattaaaagtacctgcatgctttcttgcctagnnnnnnnnactttataactttcttggatctagcattatagattt |
218 |
Q |
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| T |
33902991 |
gccaccagctaagtaagtttccccaattaaaagtacctgcatgctttcttgcctagttttttttattttataactttcttggatctagcattatagattt |
33902892 |
T |
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| Q |
219 |
cactttttgaacaccaaaacaacatttactaaataagcatgtatttaactataagaaataatatttgtacaactcttctgcgataattttttaacaattt |
318 |
Q |
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| T |
33902891 |
cactttttgaacaccaaaagaacatttactaaacaagcacatatttaactataagaaatgatatttgtacaactcttctgtgataattttttgacaattt |
33902792 |
T |
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| Q |
319 |
tccctctcttactcaccttatgttattacttcatctc |
355 |
Q |
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| T |
33902791 |
tccctctcttactcacgttatgttattacttcatctc |
33902755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 27563485 - 27563555
Alignment:
| Q |
272 |
agaaataatatttgtacaactcttctgcgataattttttaacaattttccctctcttactcaccttatgtt |
342 |
Q |
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| T |
27563485 |
agaaatgatatttgtacaatcattttgctataattttttgacaattttctctctcatactcacattatgtt |
27563555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 32196647 - 32196701
Alignment:
| Q |
280 |
tatttgtacaactcttctgcgataattttttaacaattttccctctcttactcac |
334 |
Q |
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| T |
32196647 |
tatttgtacaacccttttgcaataattttttgacaattttctctctcatactcac |
32196701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 3091742 - 3091809
Alignment:
| Q |
272 |
agaaataatatttgtacaactcttctgcgataattttttaacaattttccctctcttactcaccttat |
339 |
Q |
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| T |
3091742 |
agaaatgatatttgtacaactattttgtgataactttttgacaattttctctctcatactcacattat |
3091809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 11743052 - 11742976
Alignment:
| Q |
272 |
agaaataatatttgtacaactcttctgcgataattttttaacaattttccctctcttactcaccttatgttattact |
348 |
Q |
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||||||||||||||||||||| || | |||||||||| |||||||| ||||| ||||||| |||| || ||||| |
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| T |
11743052 |
agaaataatatttgtacaactattttttgataatttttagacaattttttctctcatactcacattatatttttact |
11742976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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