View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4223_low_11 (Length: 354)

Name: NF4223_low_11
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4223_low_11
NF4223_low_11
[»] chr3 (3 HSPs)
chr3 (1-353)||(5885197-5885549)
chr3 (30-353)||(54946214-54946528)
chr3 (3-33)||(54946605-54946635)
[»] chr6 (2 HSPs)
chr6 (30-353)||(16856177-16856500)
chr6 (1-33)||(16856069-16856101)
[»] chr4 (3 HSPs)
chr4 (32-353)||(43942417-43942740)
chr4 (98-350)||(2501108-2501361)
chr4 (1-35)||(43942276-43942310)
[»] chr7 (2 HSPs)
chr7 (30-353)||(47933412-47933726)
chr7 (3-33)||(47933803-47933833)
[»] scaffold0182 (3 HSPs)
scaffold0182 (30-341)||(10995-11317)
scaffold0182 (301-353)||(10943-10995)
scaffold0182 (5-34)||(11399-11428)
[»] chr2 (2 HSPs)
chr2 (195-353)||(26230846-26231004)
chr2 (98-183)||(26231047-26231132)
[»] scaffold0713 (1 HSPs)
scaffold0713 (1-98)||(7513-7610)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 5885549 - 5885197
Alignment:
Q  1 acactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5885549 acactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttat 5885450  T
Q  101 aatatttacaccatctccattgaatttgtctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccc 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5885449 aatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccc 5885350  T
Q  201 tttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885349 tttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgactt 5885250  T
Q  301 ttccaccatgtttactattgatgtcaataacaccaaaccatctttctacactt 353  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5885249 ttccaccatgtctactattgatgtcaataacaccaaaccatctttctacactt 5885197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 54946528 - 54946214
Alignment:
Q  30 agaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  54946528 agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt 54946430  T
Q  130 ctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 229  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  54946429 ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc 54946330  T
Q  230 tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaata 329  Q
    ||||||||||| ||        ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  54946329 tcattccttttatg--------gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaata 54946238  T
Q  330 acaccaaaccatctttctacactt 353  Q
    ||||||||||||||||||||||||    
T  54946237 acaccaaaccatctttctacactt 54946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 54946635 - 54946605
Alignment:
Q  3 actaatcaattgcaatcttaataagaaagaa 33  Q
    |||||||||||||||||||||||||||||||    
T  54946635 actaatcaattgcaatcttaataagaaagaa 54946605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 16856177 - 16856500
Alignment:
Q  30 agaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16856177 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcgccattgaatttgt 16856276  T
Q  130 ctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 229  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  16856277 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttctctttttccctttcacctatatgataaccaacgcaaatc 16856376  T
Q  230 tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaata 329  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16856377 tcattccttttctgctcattctgtagtatttgttgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaata 16856476  T
Q  330 acaccaaaccatctttctacactt 353  Q
    ||||||||||| ||||||||||||    
T  16856477 acaccaaaccaactttctacactt 16856500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16856069 - 16856101
Alignment:
Q  1 acactaatcaattgcaatcttaataagaaagaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  16856069 acactaatcaattgcaatcttaataagaaagaa 16856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 32 - 353
Target Start/End: Original strand, 43942417 - 43942740
Alignment:
Q  32 aacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttata--atatttacaccatctccattgaatttgt 129  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  43942417 aacttttacatccttcattcttataactccttcaactactattttttaaaaacattgattatttgttatataatatttacaccatcaccattgaatttgt 43942516  T
Q  130 ctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 229  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  43942517 ctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctacatgataaccaacgcaaatc 43942616  T
Q  230 tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaata 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43942617 tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtctactattgatgtcaata 43942716  T
Q  330 acaccaaaccatctttctacactt 353  Q
    ||||||||||||||||||||||||    
T  43942717 acaccaaaccatctttctacactt 43942740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 98 - 350
Target Start/End: Complemental strand, 2501361 - 2501108
Alignment:
Q  98 tataatatttacaccatctccattgaatttgtctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttccttttt 197  Q
    ||||||||||||||||||  |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||    ||||||||||||    
T  2501361 tataatatttacaccatcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttccttttt 2501262  T
Q  198 ccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttga 297  Q
    ||||||||||||||| |||| || | | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| |    
T  2501261 ccctttcacctatataataatca-cactaatctcattccttttctgctcattctgtaacatttcatgatcaattttatcatttacctcattctctcttca 2501163  T
Q  298 cttttccaccatgtttactattgatgtcaataacaccaaac--catctttctaca 350  Q
     ||||||| ||||| |||||  || | |||||||||| |||  ||||||||||||    
T  2501162 tttttccatcatgtctactacagaggacaataacaccgaaccacatctttctaca 2501108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43942276 - 43942310
Alignment:
Q  1 acactaatcaattgcaatcttaataagaaagaact 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  43942276 acactaatcaattgcaaccttaataagaaagaact 43942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 47933726 - 47933412
Alignment:
Q  30 agaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  47933726 agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt 47933628  T
Q  130 ctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 229  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  47933627 ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc 47933528  T
Q  230 tcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttactattgatgtcaata 329  Q
    ||||||||||| ||        ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  47933527 tcattccttttatg--------gtaatatttgatgatcaattttatcatttgcctcattttttcttgacttttccaccatgtctactattgatgtcaata 47933436  T
Q  330 acaccaaaccatctttctacactt 353  Q
    ||||||||||||||||||||||||    
T  47933435 acaccaaaccatctttctacactt 47933412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 47933833 - 47933803
Alignment:
Q  3 actaatcaattgcaatcttaataagaaagaa 33  Q
    |||||||||||||||||||||||||||||||    
T  47933833 actaatcaattgcaatcttaataagaaagaa 47933803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 11317 - 10995
Alignment:
Q  30 agaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11317 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcaccattgaatttgt 11218  T
Q  130 ctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaat- 228  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||      |     
T  11217 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataacaaatattcctt 11118  T
Q  229 -----------ctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttcttgacttttccaccatgtttacta 317  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  11117 ttccttttctgctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttctt-acttttccaccatgtctacta 11019  T
Q  318 ttgatgtcaataacaccaaaccat 341  Q
    ||||||||||||||||||||||||    
T  11018 ttgatgtcaataacaccaaaccat 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 10995 - 10943
Alignment:
Q  301 ttccaccatgtttactattgatgtcaataacaccaaaccatctttctacactt 353  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10995 ttccaccatgtctactattgatgtcaataacaccaaaccatctttctacactt 10943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 11428 - 11399
Alignment:
Q  5 taatcaattgcaatcttaataagaaagaac 34  Q
    ||||||||||||||||||||||||||||||    
T  11428 taatcaattgcaatcttaataagaaagaac 11399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 353
Target Start/End: Complemental strand, 26231004 - 26230846
Alignment:
Q  195 tttccctttcacctatatgataaccaacgcaaatctcattccttttctgctcattctgtaatatttgatgatcaattttatcatttacctcattttttct 294  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||| | |||    
T  26231004 tttccctttcacctatataataaccaacactaatctcattccttttatgatcattctgtaatatttgatgatgaagtttatcatttacctcattctctct 26230905  T
Q  295 tgacttttccaccatgtttactattgatgtcaataacaccaaaccatctttctacactt 353  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||||    
T  26230904 tgacttttccactatgtctactgttgatgtcaataacaccaaaccatgtttctacactt 26230846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 26231132 - 26231047
Alignment:
Q  98 tataatatttacaccatctccattgaatttgtctgtttacgttcttccacataaaggttaaaaagatgttacattttagctcattc 183  Q
    |||| |||||||||||||  ||||| || ||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||    
T  26231132 tatattatttacaccatcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacattttagatcattc 26231047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7513 - 7610
Alignment:
Q  1 acactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactatgttttaaaaacattgattatttgtt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7513 acactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgtt 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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