View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_12 (Length: 350)
Name: NF4223_low_12
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_12 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 20478186 - 20478521
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478186 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
20478285 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478286 |
ccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
20478385 |
T |
|
| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478386 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtaggtccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
20478485 |
T |
|
| Q |
315 |
gctcatcatttgcagcacctccgcctatgctactcc |
350 |
Q |
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| T |
20478486 |
gctcatcatttgcagcacctccgcctctactactcc |
20478521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 38513667 - 38513980
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38513667 |
cagcttcattgcaaacattagcaatatccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcgtggtcaagtttgat |
38513766 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
| |
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|| ||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38513767 |
ccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgttatttggcggtcaaaacgccccggtctaagtagggctttg |
38513866 |
T |
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| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38513867 |
tctaatacatcaggtctatttgtacctgccagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
38513966 |
T |
|
| Q |
315 |
gctcatcatttgca |
328 |
Q |
| |
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| |||||||||||| |
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| T |
38513967 |
gttcatcatttgca |
38513980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 29728751 - 29728440
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
| |
|
|||||||||||||||| |||| ||| || ||||||| ||||||| ||||||||||||||||| | | |||| |||| |||| || ||| ||||||||| |
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| T |
29728751 |
cagcttcattgcaaacattagaaatatctgctccagtaaatccttgagtaagggatgcaagcctttttgaaaaatacaaaggttcgtgggaaagtttgat |
29728652 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
| |
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| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||| || || || | ||||| |
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| T |
29728651 |
cttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatttggcgatcgaaacgcccaggcctgagcagagcttta |
29728552 |
T |
|
| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29728551 |
tctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaagtacgatcac |
29728452 |
T |
|
| Q |
315 |
gctcatcatttg |
326 |
Q |
| |
|
|||||||||||| |
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| T |
29728451 |
gctcatcatttg |
29728440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 24004348 - 24004037
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||| |||||||||||||| |
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|
| T |
24004348 |
cagcttcattgcaaacattagcaatgtctgctccagcaaatcctggagtaagggctgcaagcctctgagaataatatgaaggctcgtggtcaagtttgat |
24004249 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||| ||| |
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| T |
24004248 |
ttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgcggtcaaaacgcccaggcctaagtaaggcgttg |
24004149 |
T |
|
| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24004148 |
tctaatatatcagctctatttgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatttccaccaacaattgatttaaagtactttcac |
24004049 |
T |
|
| Q |
315 |
gctcatcatttg |
326 |
Q |
| |
|
|||||||||||| |
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| T |
24004048 |
gctcatcatttg |
24004037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 3274 - 2971
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
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|
| T |
3274 |
cagcttcattgcaaacattagcaatctccactccagaaaatcctggagtaagggatgcaagtctatgtgaataatatgaaggctcattgtcaagtttgat |
3175 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
| |
|
|| ||||||||||| ||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
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|
| T |
3174 |
tctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgttatttggcggtcaaaacgccctggtctaactagggctttg |
3075 |
T |
|
| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3074 |
tctaatacatcagctctatttgtaccagctagcacaacaactccagaagtggttccaaatccatccatctccaccaacaattgatttaaagtattttcac |
2975 |
T |
|
| Q |
315 |
gctc |
318 |
Q |
| |
|
|||| |
|
|
| T |
2974 |
gctc |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 16838226 - 16837915
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||| ||||||| ||||||||||||||||| | | |||| |||| |||| || ||| ||||||||| |
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| T |
16838226 |
cagcttcattacaaacattagcaatctctgctccagtaaatccttgagtaagggatgcaagcctttttgaaaaatacaaaggttcgtgggaaagtttgat |
16838127 |
T |
|
| Q |
115 |
ccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttg |
214 |
Q |
| |
|
| | |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| || |||||||| | || || | ||||| |
|
|
| T |
16838126 |
cttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatttggcgatcgaaacgcccatgcctgagcagagcttta |
16838027 |
T |
|
| Q |
215 |
tctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcac |
314 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16838026 |
tctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaagtacgttcac |
16837927 |
T |
|
| Q |
315 |
gctcatcatttg |
326 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16837926 |
gctcatcatttg |
16837915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 45285042 - 45284926
Alignment:
| Q |
15 |
cagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgat |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45285042 |
cagcttcattgcaaacattagcaatgtctgatccagcaaatcatggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttaat |
45284943 |
T |
|
| Q |
115 |
ccttttcaagtaaatct |
131 |
Q |
| |
|
||||||||||||||||| |
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| T |
45284942 |
ccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 45284926 - 45284835
Alignment:
| Q |
171 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagca |
262 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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|
| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctattggtacctgccagcacaacaactccagca |
45284835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 45284842 - 45284797
Alignment:
| Q |
283 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgca |
328 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45284842 |
ctccagcaacaattgatttaaagtactttcaccctcatcatttgca |
45284797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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