View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_13 (Length: 342)
Name: NF4223_low_13
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 47426290 - 47426089
Alignment:
| Q |
17 |
ttaatgtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat- |
115 |
Q |
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| T |
47426290 |
ttaatgtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaatt |
47426191 |
T |
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| Q |
116 |
----------caaatttacacgcctaaaatgattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtt |
205 |
Q |
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| T |
47426190 |
aaaaacaagacaaatttacacgcctaaaatgattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtt |
47426092 |
T |
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| Q |
206 |
taa |
208 |
Q |
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||| |
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| T |
47426091 |
taa |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 47426007 - 47425896
Alignment:
| Q |
220 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatggactaaatctaaatccttgtcacgaa |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
320 |
caactaattcat |
331 |
Q |
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| T |
47425907 |
caactaattcat |
47425896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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