View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_14 (Length: 341)
Name: NF4223_low_14
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 8862895 - 8863211
Alignment:
| Q |
15 |
aagtggaacagtccaaaaagggcttaaaagcgtagcatgtgaaggaacaagctatgcatatcaaaaagcagataaaccaatgcatgctgtttcttccaca |
114 |
Q |
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| T |
8862895 |
aagtggaacagtccaaaaagggcttaaaagcgtggcatgtgaaggaacaagccatgcatatcaaaaagcagataaaccaatgcatgctgtttcttccaca |
8862994 |
T |
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| Q |
115 |
gnnnnnnnngtgattgtccttttcggttcagtatattcaaagcaagagtggcaaaattcacatcactattatgtcaatttcgtgcaaaaggaaagaaaaa |
214 |
Q |
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| T |
8862995 |
gaaaaaaa-gtgattgtccttttcggttcagtatattcaaagcaagagtggcaaaattcacatcactattatgtcaatttcgtgcaaaaggaaagaaaaa |
8863093 |
T |
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| Q |
215 |
taagctaagcagagagatgaatttaatgcttgtgtatattttattagcttccaaagtttcacggctaagttattgtgtaggacacaaaccattnnnnnnn |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
8863094 |
taagctaagcagagagatgaatttaatgcttgtgtataatttattagcttccaaagtttcacggctaaggtgttgtgtaggacacaaaccattccccccc |
8863193 |
T |
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| Q |
315 |
ggaaatttacagtattat |
332 |
Q |
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|||||||||||||||||| |
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| T |
8863194 |
ggaaatttacagtattat |
8863211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8878760 - 8878682
Alignment:
| Q |
15 |
aagtggaacagtccaaaaagggcttaaaagcgtagcatgtgaaggaacaagctatgcatatcaaaaagcagataaacca |
93 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
8878760 |
aagtggaacagtccaaaaagggattaaaagcgtagcatgtgaaggaacaagctatgcatataaaaaagcaggtaaacca |
8878682 |
T |
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