View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4223_low_16 (Length: 303)
Name: NF4223_low_16
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_16 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 14436162 - 14435873
Alignment:
| Q |
14 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
113 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
14436162 |
tacttggaaaatcatattacttgcaaatttctgctactgttcttgaagtggaaaccattgggttgctagaagctatgaagatgacaatctccaatggtgt |
14436063 |
T |
|
| Q |
114 |
gcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgt |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14436062 |
gcataatgttatatttgaaactgacggtagatccttggtgaatgcactttactctactactactcccctcaatgaatttggagaccttgtggttcaatgt |
14435963 |
T |
|
| Q |
214 |
aaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagccgcc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
14435962 |
aaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtatgtaaataaggttgctcatagtattgctagagccgcc |
14435873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 30928091 - 30928276
Alignment:
| Q |
107 |
atggcgtgcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggt |
206 |
Q |
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|
||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||| |||||| | |
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|
| T |
30928091 |
atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccctcaatgaatttggagatcttgtgat |
30928190 |
T |
|
| Q |
207 |
tcaatgtaaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagccgcc |
303 |
Q |
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|||||||||||||||||| || ||||| ||| ||||||||||| |||| || |||||||||||| |||||||||||||||||||||| |
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| T |
30928191 |
tcaatgtaaaaatatctt-----------acgactttgtggcgtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgcc |
30928276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 30927971 - 30928088
Alignment:
| Q |
14 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
113 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
30927971 |
tacttggaaaatcatattacatgcaattttctgctact--tcttgaagtggaaactattgggctgctagaagctatgaagatggcaatctccaatggcat |
30928068 |
T |
|
| Q |
114 |
gcataatgttatatttgaaa |
133 |
Q |
| |
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|||||||||| | ||||||| |
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|
| T |
30928069 |
gcataatgttttttttgaaa |
30928088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 42700204 - 42700152
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
|||||||||||||||||| || ||||| ||| | |||||||||||||||||| |
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|
| T |
42700204 |
gtgtcgtttgttatgaggcaaacaaatagggtagctcatagtattgctagagc |
42700152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 2333416 - 2333689
Alignment:
| Q |
21 |
aaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataat |
120 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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|
| T |
2333416 |
aaaatcagattacatgcaaaattctgctactattcttaaggtggaaaccattgggctgctagaagctatggagatggcaatctccaatggcatgcataat |
2333515 |
T |
|
| Q |
121 |
gttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagacc--ttgtggttcaatgtaaaaa |
218 |
Q |
| |
|
||||||||||||| |||| |||||||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
2333516 |
gttatatttgaaactgacagtagatccatggagaatgcactctactctactaccactcccctcaatgaatttggagaccttttgtgattcaatgtaaaaa |
2333615 |
T |
|
| Q |
219 |
tatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattg |
292 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||||| |||||||||| |
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|
| T |
2333616 |
catcttgttaagtaatcacgactttatgatgttgtttgttaggaggcaagtaaataaggttgcacatagtattg |
2333689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 34297766 - 34297476
Alignment:
| Q |
14 |
tacttagaaaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgt |
113 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||| || | | |||||| | |
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|
| T |
34297766 |
tacttggaaaatcatattacttgcaaatttccgctactgttcttgaagtggaaaccattggatggctagaagaaatgaagatggcagttttcaatggtat |
34297667 |
T |
|
| Q |
114 |
gcataatgttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgt |
213 |
Q |
| |
|
|||| ||||||| ||||||| |||| ||||||| || ||||||||||| ||| |||||||||||| ||||||| |||||| |||| ||||| ||| ||| |
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|
| T |
34297666 |
gcatgatgttatctttgaaactgacagtagatctttagtgaatgcactctacactactactactctcctcaatgaatttgaagactttgtgattcggtgt |
34297567 |
T |
|
| Q |
214 |
aaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataagg-ttgatcatagtattgctagagccgcc |
303 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||| |||||||||||| |||| |||||||||||| ||| ||||| ||||| |||||||||| |
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|
| T |
34297566 |
aaaaatattttgtcaagtaatcacgactttatgatgtcgtttgttaggaggcaagtaaataaggtttgctcatattattgttagagccgcc |
34297476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 55640946 - 55641222
Alignment:
| Q |
22 |
aaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataatg |
121 |
Q |
| |
|
|||||| ||||| ||| |||||| |||| ||||||| |||||| ||||||||| |||||||||||||||||||| |||| | |||||| ||||| | | |
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|
| T |
55640946 |
aaatcagattacttgcgaatttccgctattgttcttgaagtgggaaccattggattgctagaagctatgaagatggcaattttcaatggtatgcatgaag |
55641045 |
T |
|
| Q |
122 |
ttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgtaaaaatat |
221 |
Q |
| |
|
|||||||||||| ||| |||||| || | |||||||| ||| |||||| ||||||| ||||| ||||| | |||||||| |||||||||||||||| |
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|
| T |
55641046 |
ttatatttgaaacggacaatagatctttagaaaatgcactatacactactaatactcccttcaatgaatttaaaaaccttgtgattcaatgtaaaaatat |
55641145 |
T |
|
| Q |
222 |
cttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataaggttg-atcatagtattgctagagc |
299 |
Q |
| |
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| ||||| ||||||||| ||||||||| ||||| ||| | ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
55641146 |
c--gttaactaatcacaattttatggtgccgttttttaacatacaagtaaataaggttgtttcataatattgctagagc |
55641222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 42661309 - 42661583
Alignment:
| Q |
22 |
aaatcatattacatgcaaatttctgctactgttcttaaagtggaaaccattgggctgctagaagctatgaagatgacaatctccaatggcgtgcataatg |
121 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| ||||||| |||||||||||||||| ||||||||||||| |||||| |||| | |||||| ||||| | | |
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|
| T |
42661309 |
aaatcaaattacttgcgaattttcgctattgttcttgaagtggaaaccattggattgctagaagctataaagatggcaattttcaatggtatgcatgaag |
42661408 |
T |
|
| Q |
122 |
ttatatttgaaattgacggtagatccttggtgaatgcactttactctactactactcccctcaataaatttggagaccttgtggttcaatgtaaaaatat |
221 |
Q |
| |
|
||||||||||| ||| |||||| || || |||||||| ||| |||||||||||||| ||||| ||||| | |||||||| ||| |||||||||||| |
|
|
| T |
42661409 |
ttatatttgaacg-gacactagatctttagtaaatgcactatacactactactactcccttcaatgaatttaaaaaccttgtgattccatgtaaaaatat |
42661507 |
T |
|
| Q |
222 |
cttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
| | ||| ||||||||| ||| ||||| ||||| ||| | ||||||||||||||| || || |||||||||||| |
|
|
| T |
42661508 |
c--gataactaatcacaattttgtggtgccgttttttaacatacaagtaaataaggttgctcgtaatattgctagagc |
42661583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 21257050 - 21257102
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
21257050 |
gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc |
21257102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 38761461 - 38761409
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||||||||| || | ||| |||||||||| |||||||||||||||||| |
|
|
| T |
38761461 |
gtgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagc |
38761409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 291
Target Start/End: Original strand, 5645219 - 5645336
Alignment:
| Q |
174 |
tactcccctcaataaatttggagaccttgtggttcaatgtaaaaatatcttgttaagtaatcacaactttatggtgtcgtttgttatgaggtaagtaaat |
273 |
Q |
| |
|
|||||| || ||||||||||| ||||||||| ||||||||||| | ||||||||||| | | | ||| | |||||||||||| ||||||| |||| |
|
|
| T |
5645219 |
tactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgttaagtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaat |
5645318 |
T |
|
| Q |
274 |
aaggttgatcatagtatt |
291 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
5645319 |
aagattgctcatagtatt |
5645336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 27745807 - 27745755
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
27745807 |
gtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagc |
27745755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 41605372 - 41605424
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||| |||| |||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
41605372 |
gtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagc |
41605424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 16484231 - 16484179
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
16484231 |
gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc |
16484179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 27643446 - 27643394
Alignment:
| Q |
247 |
gtgtcgtttgttatgaggtaagtaaataaggttgatcatagtattgctagagc |
299 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
27643446 |
gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc |
27643394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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