View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4223_low_20 (Length: 286)
Name: NF4223_low_20
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 30619827 - 30620090
Alignment:
| Q |
4 |
agaggaaaatggcatgcaaagaacaaaagcaattgttaagtaataataatagtatatatttcacttaatcaatgttattaataaa----aaatacaacag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30619827 |
agaggaaaatggcatgcaaagaacaaaagcaattgttaagtaatagta---gtatatatttcacttaatcaatgttattaataaattaaaaatacaacag |
30619923 |
T |
|
| Q |
100 |
ggaacataaatttgtagatctaattaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30619924 |
ggaacataaatttgtagatctaattaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgt |
30620023 |
T |
|
| Q |
200 |
ccatctatgccttcaatcaattcaaaactctaaaactcaccatcatgcatctcaaaaatagaaaggct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30620024 |
ccatctatgccttcaatcaattcaaaactct-aaactcaccatcatgcatctcaaaaatagaaaggct |
30620090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 7210527 - 7210439
Alignment:
| Q |
123 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
211 |
Q |
| |
|
||||||||||||||||| | || ||||| ||| |||| |||||||||||||| | || |||||||||||||| |||||||||||||| |
|
|
| T |
7210527 |
ttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcatatctcccagtccatctatgcct |
7210439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 41965262 - 41965314
Alignment:
| Q |
156 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
41965262 |
cttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatg |
41965314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 13683511 - 13683569
Alignment:
| Q |
153 |
tctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatgcct |
211 |
Q |
| |
|
||||||||||| || |||||||| || || ||||||||||| ||||||||||||||||| |
|
|
| T |
13683511 |
tctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatgcct |
13683569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 5178479 - 5178564
Alignment:
| Q |
123 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
208 |
Q |
| |
|
||||||||| ||||||| | || || |||||| || |||| || |||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
5178479 |
ttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
5178564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 24563155 - 24563207
Alignment:
| Q |
156 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
208 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
24563155 |
cttctacagctgttatcccaaaggtgagcttcataccttccagtccatctatg |
24563207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 53235953 - 53236005
Alignment:
| Q |
156 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
208 |
Q |
| |
|
||||| |||||||| ||||| || || |||||||||||||| ||||||||||| |
|
|
| T |
53235953 |
cttctgcaactattgtcccatagatgtgcttcatatctccccgtccatctatg |
53236005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University