View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4223_low_22 (Length: 250)

Name: NF4223_low_22
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4223_low_22
NF4223_low_22
[»] chr3 (9 HSPs)
chr3 (21-250)||(32463656-32463885)
chr3 (42-201)||(26678166-26678326)
chr3 (65-234)||(31637504-31637674)
chr3 (65-237)||(6999528-6999701)
chr3 (42-139)||(30468702-30468799)
chr3 (65-178)||(16932960-16933073)
chr3 (41-135)||(25737535-25737629)
chr3 (45-87)||(26682368-26682410)
chr3 (65-178)||(12723453-12723566)
[»] chr2 (6 HSPs)
chr2 (42-250)||(17902770-17902974)
chr2 (44-162)||(39648250-39648368)
chr2 (42-139)||(12997272-12997369)
chr2 (42-139)||(26423239-26423336)
chr2 (92-171)||(3121148-3121227)
chr2 (91-161)||(26999275-26999345)
[»] chr5 (6 HSPs)
chr5 (65-234)||(33305019-33305189)
chr5 (42-139)||(22697619-22697716)
chr5 (42-216)||(18678436-18678611)
chr5 (42-139)||(31089447-31089544)
chr5 (42-139)||(24442586-24442683)
chr5 (41-162)||(20863992-20864113)
[»] chr1 (5 HSPs)
chr1 (65-234)||(35322254-35322424)
chr1 (42-139)||(45274306-45274403)
chr1 (65-162)||(14585829-14585926)
chr1 (65-178)||(33737541-33737654)
chr1 (70-122)||(31592302-31592354)
[»] chr4 (6 HSPs)
chr4 (65-237)||(6682678-6682851)
chr4 (42-139)||(36220790-36220887)
chr4 (45-135)||(33037116-33037206)
chr4 (42-139)||(12702007-12702104)
chr4 (42-139)||(12904102-12904199)
chr4 (65-178)||(36480842-36480955)
[»] chr6 (3 HSPs)
chr6 (65-234)||(13997246-13997416)
chr6 (108-178)||(1856238-1856308)
chr6 (65-178)||(330163-330276)
[»] scaffold0233 (1 HSPs)
scaffold0233 (92-250)||(19363-19523)
[»] chr8 (1 HSPs)
chr8 (42-139)||(17904717-17904814)
[»] chr7 (4 HSPs)
chr7 (49-155)||(36065707-36065813)
chr7 (42-120)||(5045512-5045590)
chr7 (65-178)||(48207482-48207595)
chr7 (91-128)||(18860560-18860597)
[»] scaffold0479 (1 HSPs)
scaffold0479 (65-178)||(10779-10892)
[»] scaffold0112 (1 HSPs)
scaffold0112 (150-250)||(23836-23937)
[»] scaffold0570 (1 HSPs)
scaffold0570 (69-178)||(4922-5031)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 32463656 - 32463885
Alignment:
Q  21 caaaagtgcatttaagccatttggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacat 120  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32463656 caaaagtgcatttaagccatctggaaactagcattatgtggtgttttcttagctagactatgggcaatattattggcttgtctcctaataaacttcacat 32463755  T
Q  121 catagttcgttaaatcagtttccaacaagtgtctacaatcattgattattgtcataaatcaaagacaccgtcattcccatatatgctatgtgccacaact 220  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  32463756 catagttcgttaaatcagttcccaacaagtgtctacaatcattgattattgtcataaatcaaagacaccgtccttcccatatatgctatgtgccataact 32463855  T
Q  221 ttagagtccgtttcaaaatctatgttcacc 250  Q
    ||||||||||||||||||||||||||||||    
T  32463856 ttagagtccgtttcaaaatctatgttcacc 32463885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 26678166 - 26678326
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagttt 141  Q
    |||||||||| ||||| ||||| ||| ||| ||||||||||||||| |  |||||||||||||||||| ||||| |||||  ||||||||| ||||||||    
T  26678166 tggaaactagtattatatggtgcttctttatctagactatgggcaacaccattggcttgtctcctaatgaactttacatccgagttcgttagatcagttt 26678265  T
Q  142 ccaacaagtgtctacaatcattgattattgtcat-aaatcaaagacaccgtcattcccata 201  Q
    |||| ||||||||||||||||| ||||||| ||| |||||| |||||  ||| ||||||||    
T  26678266 ccaataagtgtctacaatcatttattattgccatgaaatcagagacattgtccttcccata 26678326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 31637674 - 31637504
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| |||| |  |||| ||||||||||||| |||||||||||| |||||  |||||| ||   ||||||||||||||||||||||    
T  31637674 ttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattg 31637575  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttc 234  Q
    ||||||| ||| |||||| ||||||| || || |||||||||||||  ||||||||||| ||||| |||||    
T  31637574 attattgccatgaaatcagagacaccctccttgccatatatgctatcagccacaacttttgagtctgtttc 31637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 6999528 - 6999701
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| || | |  |||| ||||||||||||| |||||||||||| |||||  |||||  ||   ||||||||||||||||||||||    
T  6999528 ttccttagctaaactatgagccacaccattgacttgtctcctaatgaacttcacatcagagttcactaaattggtactcaacaagtgtctacaatcattg 6999627  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttcaaa 237  Q
    ||||||| ||| |||||| ||||||| || || |||||||| ||||  ||||||||||| ||||  ||||||||    
T  6999628 attattgccatgaaatcagagacaccctccttgccatatattctatcagccacaacttttgagtttgtttcaaa 6999701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 30468702 - 30468799
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||  | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  30468702 tggaaactagcatgatttagtgcttccctagctagattatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 30468799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 16932960 - 16933073
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  |||||||||||||||||| ||  |||||||| |||| |||||||| ||   || ||||||||||||||||| |    
T  16932960 ttccctagctaaactatgggcaacaccattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcagcaagtgtctacaatcatgg 16933059  T
Q  165 attattgtcataaa 178  Q
    || |||| ||||||    
T  16933060 ataattgccataaa 16933073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 25737629 - 25737535
Alignment:
Q  41 ttggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaat 135  Q
    ||||||| |||||| ||||  || || | ||||||| |||||||||| ||||| || |||||||||||||||||| |||||| |||||| |||||    
T  25737629 ttggaaattagcatgatgtaatgctttcctagctaggctatgggcaacattataggtttgtctcctaataaactttacatcagagttcgctaaat 25737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 26682410 - 26682368
Alignment:
Q  45 aaactagcattatgtggtgtttccttagctagactatgggcaa 87  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  26682410 aaactagcattatatggtgtttccttaactagactatgggcaa 26682368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 12723453 - 12723566
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  ||||  || ||||||||| ||  |||||||| ||||  ||||||| ||   |||||||||||||||||||| |    
T  12723453 ttccctagctaaactatgggcaacaccattgatttatctcctaattaaactcacatcagagtttattaaatcggtcatcaacaagtgtctacaatcatgg 12723552  T
Q  165 attattgtcataaa 178  Q
    || |||| ||||||    
T  12723553 ataattgccataaa 12723566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 17902974 - 17902770
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagttt 141  Q
    |||||||||||||||||||||  ||||| |     ||||||||||| |  |||| |||||||||||||||||||||||||  ||||| ||||||||||||    
T  17902974 tggaaactagcattatgtggtacttcctaa-----actatgggcaacaccattgacttgtctcctaataaacttcacatccaagttcattaaatcagttt 17902880  T
Q  142 ccaacaagtgtctacaatcattgattattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttcaaaatc 240  Q
    | |||||||||||||||||||||||||||| ||| |||||| |||||||  | ||||||||||||||||  ||||||||||||||||||| ||  |||||    
T  17902879 ctaacaagtgtctacaatcattgattattgccatgaaatcagagacaccacccttcccatatatgctatccgccacaactttagagtccgcttttaaatc 17902780  T
Q  241 tatgttcacc 250  Q
     |||||||||    
T  17902779 catgttcacc 17902770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 39648368 - 39648250
Alignment:
Q  44 gaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttcc 143  Q
    ||||||||||| || | ||| ||||||||||| ||||||||||| | ||||||| |||||| | || |||||||||||  |||||| |||||||||   |    
T  39648368 gaaactagcataatatagtgcttccttagctaaactatgggcaacactattggcctgtctcttgatgaacttcacatctgagttcgctaaatcagtcatc 39648269  T
Q  144 aacaagtgtctacaatcat 162  Q
    |||||||||||||||||||    
T  39648268 aacaagtgtctacaatcat 39648250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 12997369 - 12997272
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||  | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  12997369 tggaaactagcatgatttagtgcttccctagctagattatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 12997272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 26423336 - 26423239
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||  |||||||||    
T  26423336 tggaaactagcatgatttagtgcttccctagctagattatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcactaaatcagt 26423239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 3121227 - 3121148
Alignment:
Q  92 attggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattgattattg 171  Q
    |||||||||||| | ||| |||||||||||  |||||| |||||| || || || |||||||||||||||||||||||||    
T  3121227 attggcttgtcttcgaatgaacttcacatccgagttcgataaatcggtgtctaaaaagtgtctacaatcattgattattg 3121148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 26999275 - 26999345
Alignment:
Q  91 tattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatca 161  Q
    ||||||||||||| ||||| ||||||| |||| |||||  ||||||| |   |||||||||||||||||||    
T  26999275 tattggcttgtcttctaatgaacttcaaatcagagttcactaaatcaatcatcaacaagtgtctacaatca 26999345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 33305019 - 33305189
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| |||| |  |||| ||||||||||||| |||||||||||| |||||  |||||| ||   ||||||||||||||||||||||    
T  33305019 ttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattg 33305118  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttc 234  Q
    ||||||| ||| |||||| ||||||| || || |||||||||||||  ||||||||||| ||||| |||||    
T  33305119 attattgccatgaaatcagagacaccctccttgccatatatgctatcagccacaacttttgagtctgtttc 33305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 22697619 - 22697716
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  22697619 tggaaactagcatgatttagtgcttccctagctagattatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 22697716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 18678611 - 18678436
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagttt 141  Q
    |||| ||||||||| | | ||| ||||||||||| |||||| |||| | ||||||||||||||||||| ||  |||||| | ||||   |||||| ||      
T  18678611 tggagactagcattgtatagtgattccttagctaaactatgagcaacactattggcttgtctcctaatgaaactcacattagagtttactaaatcggtac 18678512  T
Q  142 ccaacaagtgtctacaatcattgattattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccac 216  Q
    | ||||| |||||||||||||| ||||||| ||| |||||| ||||| |||| || ||||||||||||| ||||||    
T  18678511 ctaacaaatgtctacaatcattaattattgccatgaaatcagagacatcgtcctttccatatatgctatctgccac 18678436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 31089544 - 31089447
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||  | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  31089544 tggaaactagcatgatttagtgcttccctagctagattatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 31089447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 24442683 - 24442586
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||  |||||||| ||||||||| | |||||| |||||||||||| |||||||||||| |||||| |||||||||    
T  24442683 tggaaactagcatgatttagtgcttctctagctagattatgggcaacactattggtttgtctcctaatgaacttcacatcagagttcgctaaatcagt 24442586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 20864113 - 20863992
Alignment:
Q  41 ttggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtt 140  Q
    ||||||| |||||||||||  ||  ||| ||||||  ||||| |||| | | ||||||||||| ||||||||||||| ||   |||| ||||||| |||     
T  20864113 ttggaaaatagcattatgtaatgcctccctagctatgctatgagcaacactgttggcttgtcttctaataaacttcatattggagtttgttaaattagtc 20864014  T
Q  141 tccaacaagtgtctacaatcat 162  Q
      |||||||||| |||||||||    
T  20864013 atcaacaagtgtttacaatcat 20863992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 35322424 - 35322254
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| |||| |  |||| ||||||||||||| |||||||||||| |||||  |||||| ||   ||||||||||||||||||||||    
T  35322424 ttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattg 35322325  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttc 234  Q
    ||||||| ||| |||||| ||||||| || || |||||||||||||  ||||||||||| ||||| |||||    
T  35322324 attattgccatgaaatcagagacaccctccttgccatatatgctatcagccacaacttttgagtctgtttc 35322254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 45274306 - 45274403
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| |||| |||  | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  45274306 tggaaactagcatgatttagtgcttccctagctagattatgagcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 45274403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 14585926 - 14585829
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcat 162  Q
    |||| |||||| ||||||||||| |  ||||||||||||||||||||| ||||||||| |||| | ||| || ||   |||||||||| |||||||||    
T  14585926 ttccctagctaaactatgggcaacaccattggcttgtctcctaataaaattcacatcagagtttgctaagtcggtcatcaacaagtgtttacaatcat 14585829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 33737541 - 33737654
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  |||||||||||||||||| ||  |||||||| ||||   |||||| ||   |||||||||||||||||| |      
T  33737541 ttccctagctaaactatgggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttga 33737640  T
Q  165 attattgtcataaa 178  Q
    ||||||| ||||||    
T  33737641 attattgccataaa 33737654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 31592354 - 31592302
Alignment:
Q  70 tagctagactatgggcaatattattggcttgtctcctaataaacttcacatca 122  Q
    |||||| |||||| ||||  | |||||||||||||||||||||| ||||||||    
T  31592354 tagctaaactatgagcaacttcattggcttgtctcctaataaacctcacatca 31592302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 6682851 - 6682678
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| |||| |  |||| ||||||||||||| ||||| |||||| |||||  |||||| ||   ||||||||||||||||||||||    
T  6682851 ttccttagctaaactatgagcaacaccattgacttgtctcctaatgaactttacatcagagttcactaaatcggtactcaacaagtgtctacaatcattg 6682752  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttcaaa 237  Q
    ||||||| ||| |||||| ||||||| || || |||||||||||||  ||||||||||| ||||| ||||||||    
T  6682751 attattgccataaaatcagagacaccctccttgccatatatgctatcagccacaacttttgagtctgtttcaaa 6682678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 36220790 - 36220887
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||||| |||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  36220790 tggaaactagcatgatttagtgcttccctagctagattatgggcaatactattggcttgtctcctaatggacttcacatcagagttcgctaaatcagt 36220887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 33037116 - 33037206
Alignment:
Q  45 aaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaat 135  Q
    |||||||||| || | |||  ||| |||||| ||||||||||| | |||||| ||||||||||||||||||||||||| |||| |||||||    
T  33037116 aaactagcataatttagtgcctccctagctaaactatgggcaacactattggtttgtctcctaataaacttcacatcagagtttgttaaat 33037206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 12702007 - 12702104
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    |||||||||| || || | ||| |||| ||| |||| ||| ||||| | |||||| |||||||||||| |||||||||||| |||||| |||||||||    
T  12702007 tggaaactaggatgatttagtgcttccctagttagattataggcaaaactattggtttgtctcctaatgaacttcacatcagagttcgctaaatcagt 12702104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 12904199 - 12904102
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    |||||||||| || || | ||| |||| ||| |||| ||| ||||| | ||||||||||||||||||| ||||||||||   |||||| |||||||||    
T  12904199 tggaaactaggatgatttagtgcttccctagttagattataggcaacactattggcttgtctcctaatgaacttcacatatgagttcgctaaatcagt 12904102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 36480842 - 36480955
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  |||||||||||||||||| ||  |||||||| ||||   |||||| ||   |||||||||||||||||| |      
T  36480842 ttccctagctaaactatgggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttga 36480941  T
Q  165 attattgtcataaa 178  Q
    ||||||| ||||||    
T  36480942 attattgccataaa 36480955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 13997246 - 13997416
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| |||||| |||| |  |||| ||||||||||||| ||||| |||||| |||||  |||||| ||   ||||||||||||||||||||||    
T  13997246 ttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttaacatcagagttcactaaatcggtactcaacaagtgtctacaatcattg 13997345  T
Q  165 attattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttc 234  Q
    ||||||| ||| |||||| ||||||| || || ||||||||| |||  ||||||||||| ||||| |||||    
T  13997346 attattgccataaaatcagagacaccctccttgccatatatgttatcagccacaacttttgagtctgtttc 13997416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 1856238 - 1856308
Alignment:
Q  108 ataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattgattattgtcataaa 178  Q
    ||||||||||||||| ||||  ||||||||||  ||||||| ||||||||||| |||||||||| ||||||    
T  1856238 ataaacttcacatcagagtttattaaatcagtgaccaacaattgtctacaatctttgattattgccataaa 1856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 330276 - 330163
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  |||||||||||||||||||||  |||||||| ||||   ||| || ||   ||||||||||||||||||||      
T  330276 ttccctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcatga 330177  T
Q  165 attattgtcataaa 178  Q
    ||||||| ||||||    
T  330176 attattgccataaa 330163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 19363 - 19523
Alignment:
Q  92 attggcttgtctcctaataaacttcacatcatagtt-cgttaaatcagtttccaacaagtgtctacaatcattgattattgtcat-aaatcaaagacacc 189  Q
    |||| ||||||||||||| |||||||||||| |||| |  ||||||||| | ||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  19363 attgacttgtctcctaatgaacttcacatcagagtttcactaaatcagtattcaacaagtgtctacaatcatttattattgccatgaaatcaaagacacc 19462  T
Q  190 gtcattcccatatatgctatgtgccacaactttagagtccgtttcaaaatctatgttcacc 250  Q
     || || |||||||||||||  ||| |||||||  |||| ||||| ||||| |||| ||||    
T  19463 atccttgccatatatgctatcagccgcaacttttcagtctgtttcgaaatccatgtgcacc 19523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 17904717 - 17904814
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagt 139  Q
    ||||||||||||| || | |||||||| |||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  17904717 tggaaactagcatgatttagtgtttccctagctagattatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagt 17904814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 36065813 - 36065707
Alignment:
Q  49 tagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaa 148  Q
    |||||| |||||||| |||| | ||||||||||| ||||||| ||||| ||||||| |||| ||||||||| || |||||| |||||||||  |||||||    
T  36065813 tagcatgatgtggtgcttccctcgctagactatgagcaatatcattggtttgtctcttaatgaacttcacaacaaagttcgctaaatcagtggccaacaa 36065714  T
Q  149 gtgtcta 155  Q
    |||||||    
T  36065713 gtgtcta 36065707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 5045590 - 5045512
Alignment:
Q  42 tggaaactagcattatgtggtgtttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacat 120  Q
    ||||||||||||| || | ||| |||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  5045590 tggaaactagcatgatttagtgcttccctagctagattatgggcaacactattggcttgtctcctaataaacttcacat 5045512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 48207595 - 48207482
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    |||| |||||| ||||||||||| |  |||||||||||||||||||||  |||||||| ||||   ||| || ||   ||| ||||||||||||||||      
T  48207595 ttccctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaaaaagtgtctacaatcatga 48207496  T
Q  165 attattgtcataaa 178  Q
    ||||||| ||||||    
T  48207495 attattgccataaa 48207482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 18860560 - 18860597
Alignment:
Q  91 tattggcttgtctcctaataaacttcacatcatagttc 128  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  18860560 tatttgcttatctcctaataaacttcacatcatagttc 18860597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 10892 - 10779
Alignment:
Q  65 ttccttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattg 164  Q
    ||||||||||| ||||||||||| |  |||||||||||||||||| ||  |||||||| |||| |||||||| ||   |||||||||||||||||||| |    
T  10892 ttccttagctaaactatgggcaacacgattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcaacaagtgtctacaatcatgg 10793  T
Q  165 attattgtcataaa 178  Q
    || |||| ||||||    
T  10792 ataattggcataaa 10779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 23937 - 23836
Alignment:
Q  150 tgtctacaatcattgattattgtcat-aaatcaaagacaccgtcattcccatatatgctatgtgccacaactttagagtccgtttcaaaatctatgttca 248  Q
    |||||||||||||||||||||| ||| |||||  ||||||| || || ||||||||||||   ||| ||||||| ||||| ||||| ||||| |||| ||    
T  23937 tgtctacaatcattgattattgccatgaaatctgagacaccctcctttccatatatgctaacagccgcaacttttgagtctgtttcgaaatcgatgtgca 23838  T
Q  249 cc 250  Q
    ||    
T  23837 cc 23836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 4922 - 5031
Alignment:
Q  69 ttagctagactatgggcaatattattggcttgtctcctaataaacttcacatcatagttcgttaaatcagtttccaacaagtgtctacaatcattgatta 168  Q
    ||||||| ||||||||||| |  |||||||||||| ||||| ||  |||||||| ||||   |||||| ||   |||||||||||||||||| |  ||||    
T  4922 ttagctaaactatgggcaacaccattggcttgtcttctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaatta 5021  T
Q  169 ttgtcataaa 178  Q
    ||| ||||||    
T  5022 ttgccataaa 5031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University