View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_25 (Length: 243)
Name: NF4223_low_25
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 43407621 - 43407838
Alignment:
| Q |
11 |
cacagacatcacataccttatttatttccttttttcatttctctttaatttgcgtacttattattctactacgtacgtgttctcctcaactactttaatt |
110 |
Q |
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| T |
43407621 |
cacacacatcacatacctaatttatttccttgtttcatttctctttaatttccgtacttattattctac---gtacgtgttctcctcaactacttaactt |
43407717 |
T |
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| Q |
111 |
aatt----aattcactctcttcttcattccctttctctaatatatatcttgacatgaatgatatcttctgatctttttatataggaggatctgagaaaga |
206 |
Q |
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|||| |||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43407718 |
aatttaataattgactct-tccttcattccctttctctaatatatatcatgacatgaatgatatcttctgatctttttatataggaggatctgagaaaca |
43407816 |
T |
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| Q |
207 |
actttaattataaggatggaat |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
43407817 |
actttaattataaggatggaat |
43407838 |
T |
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