View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_28 (Length: 238)
Name: NF4223_low_28
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 32464241 - 32464020
Alignment:
| Q |
17 |
attcattattttgaggtttgatttatttacttttatgtgtagacgaagtgacaaacactatatatgttgcggtttattttaaatggcaattatagctttc |
116 |
Q |
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| T |
32464241 |
attcattattttgaggtttgatttatttacttttatgtgtagacgaagtgacaaatactatatatgttgcggtttattttaaatggcaattatagctttc |
32464142 |
T |
|
| Q |
117 |
ataatagtatgagtagcacgagtgtaaaaactattttacatttgtaatgcatcttaatctattaaaccgattaaattaatgtccatc-nnnnnnnataaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32464141 |
ataatagtatgagtagcacgagtgtaaaaactattttacatttgtaatgcatcttaatctattaaaccgattaaattaatgtccatcttttttttataaa |
32464042 |
T |
|
| Q |
216 |
acatatagtcatatgcgtaatg |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
32464041 |
acatatagtcatatgcgtaatg |
32464020 |
T |
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