View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_31 (Length: 228)
Name: NF4223_low_31
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 6070606 - 6070442
Alignment:
| Q |
15 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
114 |
Q |
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| T |
6070606 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
6070507 |
T |
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| Q |
115 |
ttgtatgttgatcaatctaataaggtcattaagactccaacaattggttgattcatcaactaaat |
179 |
Q |
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| T |
6070506 |
ttgtatgttgatcaatctaataagctcattaagactccaacaattggttgattcatcaactaaat |
6070442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 6055812 - 6055961
Alignment:
| Q |
15 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
114 |
Q |
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| T |
6055812 |
agcagagaggaaaataaaggaagagatgcatggagttgaaattcgagtggtgccacctggctattt--------caggtt-------caagagagttcga |
6055896 |
T |
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| Q |
115 |
ttgtatgttgatcaatctaataaggtcattaagactccaacaattggttgattcatcaactaaat |
179 |
Q |
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| T |
6055897 |
ttgtatgttgatcaatctaataagctcattaagactccaacaattggttgattcatcaactaaat |
6055961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 6085682 - 6085518
Alignment:
| Q |
15 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
114 |
Q |
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| T |
6085682 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggttcaagagagttcga |
6085583 |
T |
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| Q |
115 |
ttgtatgttgatcaatctaataaggtcattaagactccaacaattggttgattcatcaactaaat |
179 |
Q |
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|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
6085582 |
ttgtatgttgatgaatctaataaggtcattaggactccaataattggttgattcatcaactaaat |
6085518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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