View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4223_low_4 (Length: 474)
Name: NF4223_low_4
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 45108621 - 45108337
Alignment:
| Q |
9 |
agcacagatgatacattatttaaatctatgaatgaaacgtccatgtccaacaatgttattaattctaatcttctgaactataatgtttgcatttccaccc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45108621 |
agcacagatgatacattatttaaatctatgaatgaaacgtccatgtccaacaatgttgttaattctaatcttctaaactataatgtttgcatttccaccc |
45108522 |
T |
|
| Q |
109 |
cgcctaatattctctcccatggcatatggggaaaacatgagaccgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45108521 |
cgcctaatattctctcccatggcatatggggaaaacatgagtccgaagggagtccattcaggtcctctttcccagtatttcttcatcaagtcattctaat |
45108422 |
T |
|
| Q |
209 |
ttatgtcacaacaagggctatcaattttcctatcaagaagttgggtttacccaagctcatttcacaaatgatggtaactatatat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45108421 |
ttatgtcacaacaagggctatcaattttcctatcaagcagttgggtttacccaagctcatttcacaaatgatggtaactatatat |
45108337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 353 - 457
Target Start/End: Complemental strand, 45108270 - 45108166
Alignment:
| Q |
353 |
taacttgtaatacaagtatttccttgttgcaagatagtaggataggaaaattagcatagcatagagcaaaacatgcttcagttccatgtataacaagatg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45108270 |
taacttgtaatacaagtatttccttgttgcaagatagtaggataggaaaattagcatagcatagagcaaaacatgcttcagttccatgtataacaagatg |
45108171 |
T |
|
| Q |
453 |
catgt |
457 |
Q |
| |
|
||||| |
|
|
| T |
45108170 |
catgt |
45108166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University