View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4223_low_5 (Length: 448)

Name: NF4223_low_5
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4223_low_5
NF4223_low_5
[»] chr4 (4 HSPs)
chr4 (3-358)||(27731497-27731857)
chr4 (59-338)||(27738593-27738872)
chr4 (303-337)||(51220042-51220076)
chr4 (3-48)||(27738517-27738562)
[»] chr3 (1 HSPs)
chr3 (61-338)||(21249714-21249993)
[»] chr1 (6 HSPs)
chr1 (3-355)||(21160436-21160779)
chr1 (227-446)||(21074199-21074405)
chr1 (171-358)||(21155078-21155264)
chr1 (231-421)||(21078929-21079119)
chr1 (303-339)||(17663574-17663610)
chr1 (158-198)||(21074459-21074499)
[»] chr6 (1 HSPs)
chr6 (154-259)||(14809296-14809402)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 358
Target Start/End: Original strand, 27731497 - 27731857
Alignment:
Q  3 atcatgttaatcagttcaaatgatatttaaacactaatcaccaataccatgttaattgtatatggaaaagaaaaaggacatccaactcattcaattgttt 102  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  27731497 atcatgttaatcggttcaaatgatatttaaacactaatcaccaatatcatgttaattgtatatggaaaagaaaaaggacatgcaacacattcaattgttt 27731596  T
Q  103 taatggaaaagnnnnnnnnn-----cttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaata 197  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27731597 taatggaaaaaaaaaaaaaaaaaaacttgaagggtgttcatgaaataacaaatgactatactcctctgttgagtttacatctgtgaacacattcagaata 27731696  T
Q  198 tcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatc 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731697 tcaatggaaaaacaaatcattttctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatc 27731796  T
Q  298 ctctgttggaagctcattcaaatcaaaattcataacaactctatctgccttcaattcatta 358  Q
    |||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||    
T  27731797 ctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcatta 27731857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 59 - 338
Target Start/End: Original strand, 27738593 - 27738872
Alignment:
Q  59 tgtatatggaaaagaaaaaggacatccaactcattcaattgttttaatggaaaagnnnnnnnnncttgaagggtgttcatgaaataacaaatgactatac 158  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||          |||||||||||||||||||||||||||| |||||||    
T  27738593 tgtatatagaaaagaaaaaggacattcaactcattcaattgctttaatggagaaataaataaaacttgaagggtgttcatgaaataacaaataactatac 27738692  T
Q  159 tcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataag 258  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  27738693 tcctctattgagtttccatctgtgaacacattcagaatatcaatggaaaaacaaatcattacatttgcatagaacaatgagttcaaatgacctaaataag 27738792  T
Q  259 acgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactc 338  Q
    || ||||||||| |||||||||||||||||||  ||||| ||| |||||||| |||||||||||||||||||||||||||    
T  27738793 acaatgaaagaccaattggtttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaattcataacaactc 27738872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 51220042 - 51220076
Alignment:
Q  303 ttggaagctcattcaaatcaaaattcataacaact 337  Q
    |||||||||||||| ||||||||||||||||||||    
T  51220042 ttggaagctcattcgaatcaaaattcataacaact 51220076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 27738517 - 27738562
Alignment:
Q  3 atcatgttaatcagttcaaatgatatttaaacactaatcaccaata 48  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  27738517 atcatgtgaatcagctcaaatgatattcaaacactaagcaccaata 27738562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 21249993 - 21249714
Alignment:
Q  61 tatatggaaaagaaaaaggacatccaactcattcaattgttttaatgga--aaagnnnnnnnnncttgaagggtgttcatgaaataacaaatgactatac 158  Q
    ||||| |||||||||||||||||||||||||| |||||  |||||||||  |||          |||||| ||||||||||||||||||||| |||||||    
T  21249993 tatattgaaaagaaaaaggacatccaactcatccaatttctttaatggagaaaaataaataaaacttgaaaggtgttcatgaaataacaaataactatac 21249894  T
Q  159 tcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataag 258  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||     
T  21249893 tcctctattaagtttacatttgtgaacacattcaggatatcaatggaaaaacaaatcatttcctttacaaagaacaattagttcaaatgacctaaataat 21249794  T
Q  259 acgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactc 338  Q
    || |||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  21249793 acaatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatcaaaattcataacaactc 21249714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 3 - 355
Target Start/End: Original strand, 21160436 - 21160779
Alignment:
Q  3 atcatgttaatcagttcaaatgatatttaaacactaatcaccaa-taccatgttaattgtatatggaaaagaaaaaggacatccaactcattcaattgtt 101  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||   | |  ||  ||||| ||||||||||||||||||||||||||||||||| |    
T  21160436 atcatgttaatcagttcaaatgatattcaaacactaagcaccaagtaagctatgcatc-tatatagaaaagaaaaaggacatccaactcattcaattgct 21160534  T
Q  102 ttaatgga--aaagnnnnnnnnncttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaatatc 199  Q
    ||||||||  |||          ||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||| ||      
T  21160535 ttaatggagaaaaataaataaaacttgaagagtgttcatgaaataacaaataaccatactcatctattgagtttacatctgcgaacacattcagacta-- 21160632  T
Q  200 aatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcct 299  Q
             ||||||||||||||||||||| ||||||||||| |||||||||||  ||||| ||||||||| ||||||||| |||||| ||  ||||| |    
T  21160633 ---------acaaatcatttcctttgcataaaacaatgagttcaaatgacctaaccaagacaatgaaagaccaattggttttattcatctgaaacatctt 21160723  T
Q  300 ctgttggaagctcattcaaatcaaaattcataacaactctatctgccttcaattca 355  Q
    ||||||||| |||||||||||||||||||||||||||||  | || ||||||||||    
T  21160724 ctgttggaaactcattcaaatcaaaattcataacaactccttttggcttcaattca 21160779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 227 - 446
Target Start/End: Complemental strand, 21074405 - 21074199
Alignment:
Q  227 atagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaat 326  Q
    ||||||||||||||| |||| ||||||||||||  |||||||||||||||||||             |||| |   |||||| |||||||||||||||||    
T  21074405 atagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggttt-------------catctttcattggaatctcattcaaatcaaaat 21074319  T
Q  327 tcataacaactctatctgccttcaattcattatggcttcgttctctcacggtttcaccttcattattgttcttcttctcttcaatgtcaatagaggtatt 426  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21074318 tcataacaactctatctgccttcaattcaatatggcttggttctctcacggtttcaccttcattattgttcttcttctcttcaatgtcaatagaggtatt 21074219  T
Q  427 attatcctgttccttggtct 446  Q
    |||||||| | |||||||||    
T  21074218 attatcctttaccttggtct 21074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 171 - 358
Target Start/End: Original strand, 21155078 - 21155264
Alignment:
Q  171 tttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagac 270  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| |||||    
T  21155078 tttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatg-aagac 21155176  T
Q  271 taattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactctatctgccttcaattcatta 358  Q
     |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||  | || |||||||||||||    
T  21155177 caattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcatta 21155264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 421
Target Start/End: Complemental strand, 21079119 - 21078929
Alignment:
Q  231 aacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcat 330  Q
    ||||||||||| |||| |||||||| |||  ||||||||| | |||    ||||||| ||| ||| | | |||||||||||| ||||||||||||||| |    
T  21079119 aacaatgagttcaaatcacctaaattagaaaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaatcaaaattcct 21079020  T
Q  331 aacaactctatctgccttcaattcattatggcttcgttctctcacggtttcaccttcattattgttcttcttctcttcaatgtcaatagag 421  Q
    ||||||| | |||| ||||||||||||||| ||  | |||||| | | ||||||||||||||| |||||| | ||||||||||||||||||    
T  21079019 aacaactttttctgacttcaattcattatgactctgctctctccctgattcaccttcattatttttcttcatttcttcaatgtcaatagag 21078929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 17663610 - 17663574
Alignment:
Q  303 ttggaagctcattcaaatcaaaattcataacaactct 339  Q
    |||||||||||||||||||||||||| | ||||||||    
T  17663610 ttggaagctcattcaaatcaaaattcctgacaactct 17663574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 21074499 - 21074459
Alignment:
Q  158 ctcctctattgagtttacatctgtgaacacattcagaatat 198  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  21074499 ctcctccattgagtttacatttgtgaacagattcagaatat 21074459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 14809402 - 14809296
Alignment:
Q  154 tatactcctctattgagtttacatctgtgaacacattcagaatatcaatgg-aaaaacaaatcatttcctttgcatagaacaatgagttaaaatgaccta 252  Q
    |||| |||| |||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||| || |||| |||||    
T  14809402 tatattcctttattgagtttacatttgtgtacacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 14809303  T
Q  253 aataaga 259  Q
     ||||||    
T  14809302 gataaga 14809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University