View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_8 (Length: 374)
Name: NF4223_low_8
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 39716604 - 39716951
Alignment:
| Q |
19 |
cttagtggttacagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaa |
118 |
Q |
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| T |
39716604 |
cttagtggttacagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaa |
39716703 |
T |
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| Q |
119 |
atagttcaaatgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39716704 |
atagttcaaatgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtgga |
39716803 |
T |
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| Q |
219 |
ttgaaacaacggtgaatgagtaatttatgtgcctaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgcc |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39716804 |
ttgaaacaacggtgaatgagtaatttatgtgccaaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgcc |
39716903 |
T |
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| Q |
319 |
ctcccacccaaaaattacatcaacatccattaattaattacctatgct |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39716904 |
ctcccacccaaaaattacatcaacatccattaattaattacctatgct |
39716951 |
T |
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