View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4223_low_9 (Length: 369)
Name: NF4223_low_9
Description: NF4223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4223_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 34229224 - 34228872
Alignment:
| Q |
1 |
gcgaatgaattaaagggacaacgaaaatagagtatacagtttgcagtttcatctgtgaaaattatgaactttgtcaaatgtcaatatcccaatgtctctc |
100 |
Q |
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| T |
34229224 |
gcgaatgaaataaagggacagcgaaaatagagtatacagtttgcagtttcatctgtgaaaattatgaactttgtcaa-------tatcccaatgtctctc |
34229132 |
T |
|
| Q |
101 |
cccaattactatcaattgattaacatgcatgttatacacaccttggttttggtgtgattgcaaccattttcctttgtctcctttgagcaatgaatccatc |
200 |
Q |
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| T |
34229131 |
tccaattactatcaattgattagcatgcatgttaaacacaccttggttttggtgtgattgcagccattttcctttgtctcctctgagcaatgaatccatc |
34229032 |
T |
|
| Q |
201 |
atgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatactactctaggcataactagggctgt |
300 |
Q |
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| T |
34229031 |
atgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatactacgctaggcataactagggctgt |
34228932 |
T |
|
| Q |
301 |
gactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaattat |
360 |
Q |
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| T |
34228931 |
gactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaattat |
34228872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 34237548 - 34237494
Alignment:
| Q |
302 |
actaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaatt |
358 |
Q |
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| T |
34237548 |
actaatgtcagcttcaagaaaa--tatgtgtggagaaagtatattgatttgagaatt |
34237494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 46889100 - 46889177
Alignment:
| Q |
200 |
catgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatact |
277 |
Q |
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| T |
46889100 |
catgattctaacattcttaccatcaccaatcctccatctacaagcatgtgaaaacacatgtctagaattccaaatact |
46889177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 42093134 - 42093100
Alignment:
| Q |
218 |
accatcaccaatccgccatctacaaccatgtaaaa |
252 |
Q |
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| T |
42093134 |
accatcaccaatcctccatctacaaccatgtaaaa |
42093100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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