View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4224_high_1 (Length: 493)
Name: NF4224_high_1
Description: NF4224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4224_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 39211228 - 39210744
Alignment:
| Q |
1 |
aaatctcataattatgagaattgatctcagatgcaggaactcaaaa-ttgatagcatatgaagtaacaaatagatagcatatcaaagactatactcatac |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39211228 |
aaatctcataattataagaattgatctcagatgcaggaactcaaaaattgatagcatatgaagtaacaaatagatagcatatcaaagactatactcatac |
39211129 |
T |
|
| Q |
100 |
cgaagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatc |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
39211128 |
caaagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttaattactttatc |
39211029 |
T |
|
| Q |
200 |
atcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
39211028 |
atcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacc-actctataatgctttgaaaac-aaaaatat |
39210931 |
T |
|
| Q |
300 |
gaagcggcataattaa---tattactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcattttt |
396 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39210930 |
gaagtggcataattaatactattactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcattttt |
39210831 |
T |
|
| Q |
397 |
gttctcagcaccaacattggaggcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
39210830 |
gttctcagcaccaacattggaggcgcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctcct |
39210744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 27509711 - 27510189
Alignment:
| Q |
1 |
aaatctcataattatgagaattgatctcagatgcaggaactcaaaattgatagcatatgaagtaacaaatagatagcatatcaaagactatactcatacc |
100 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
27509711 |
aaatctcataattatgagaatttaactcatatgcatgaactcaaaattgatagcatatgaagtaacaaatagaaagcatatcaaagacta--ctcatacc |
27509808 |
T |
|
| Q |
101 |
gaagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatca |
200 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
27509809 |
aaagataatgatagtatttccttaatacccaacttcgtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatca |
27509908 |
T |
|
| Q |
201 |
tcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
27509909 |
tcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacca-ctctataatgctttgaaaacaaaa-atatg |
27510006 |
T |
|
| Q |
301 |
aagcggcataattaatattactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttc |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27510007 |
aagccgcataattaatattactaattcttccagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttc |
27510106 |
T |
|
| Q |
401 |
tcagcaccaacattggaggcgcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatctctgctcct |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
27510107 |
tcagcaccaacattggaggcgcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctcct |
27510189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 27271696 - 27271209
Alignment:
| Q |
1 |
aaatctcataattatgagaattgatctcagatgcaggaactcaaaattgatagcatatgaagtaacaaa-tagatagcatatcaaagactatactcatac |
99 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| |||| |
|
|
| T |
27271696 |
aaatgtcataattatgagaattgaattcagatgcaggaactcaaaattgatagcatatgaagtaacaaaatggataacatatcgaagactatacttatac |
27271597 |
T |
|
| Q |
100 |
cgaagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatc |
199 |
Q |
| |
|
| |||||||||||||| |||||| ||| || ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
27271596 |
caaagataatgataatttttccttaatgccgaacttggcagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatc |
27271497 |
T |
|
| Q |
200 |
atcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatat |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
27271496 |
atcaaatcactaaagtgctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatat |
27271401 |
T |
|
| Q |
300 |
gaagcggcataattaatattactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgtt |
399 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
27271400 |
aaagcgacatgattaatattactaattcttccagaaatagtgcttaaattgataagatggaccatttcctccagtgcttgctgatggaggcatttttgtt |
27271301 |
T |
|
| Q |
400 |
ctcagcaccaacattggaggcgcacaaagatagacaaccct--------attcttagctgctcctgtgacacctaatttgatctctgctcct |
483 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
27271300 |
ctcaacaccaacattggaggcgcacaatgatagacaaccctatgtccccattgttagctgctcccgtgacacctaatttgatatttgctcct |
27271209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 29707161 - 29707587
Alignment:
| Q |
1 |
aaatctcataattatgagaattgatctcagatgcaggaactcaaaattgatagcatatgaagtaacaaatagatagcatatcaaagactatactcatacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
29707161 |
aaatctcataattatgagaattgaattcagatgcaggaactcaaaattgatagcatatgaagtaacaaatagataacatatcgaagactatacttatacc |
29707260 |
T |
|
| Q |
101 |
gaagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactttatca |
200 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
29707261 |
aaagataatgataatttttccttaatacccaacttggtagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatca |
29707360 |
T |
|
| Q |
201 |
tcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
29707361 |
tcaaatcactaaagtgctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatata |
29707456 |
T |
|
| Q |
301 |
aagcggcataattaatattactaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttc |
400 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
29707457 |
aagcgacatgattaatattactaattcttcaagaaatactacttaaattgataagatggaccatttcctccagtgcttgcagatggaggcatttttgttc |
29707556 |
T |
|
| Q |
401 |
tcagcaccaacattggaggcgcacaaagata |
431 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
29707557 |
tcagcaccaacattggaggcgcacaatgata |
29707587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42093250 - 42093510
Alignment:
| Q |
1 |
aaatctcataattatgagaattgatctcagatgcaggaactcaaaattgatagcatatgaagtaacaaatagatagcatatcaaagactatactcatacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
42093250 |
aaatctcataattatgagaaatgaactcagatgcaggaactcaaaattgatagcataagaagtaacaaatagatagcatatcaaagac--tacttctacc |
42093347 |
T |
|
| Q |
101 |
gaagataatgataatatttcctcaatac----ccaacttggtagcag-aaagtacacaaggcaaataataagagtaaatctcacaatttgttgattactt |
195 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||| |||||||| ||||||| |||||| || | ||||||||||||||||||||||| |
|
|
| T |
42093348 |
aaagataatgataatttttccttaatacccaaccaacttggtagcagaaaagtacataaggcaactaataaaaggacatctcacaatttgttgattactt |
42093447 |
T |
|
| Q |
196 |
tatcatcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactca |
258 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42093448 |
aatcatcaaatcacttaagtgcttaaaagtacaactaaccaaaacagtacatttctcaactca |
42093510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 31949887 - 31949733
Alignment:
| Q |
321 |
ctaattcttctagaaatactgcttaaattgataagatggaccattttctccaatgcttgcagatggaggcatttttgttctcagcaccaacattggaggc |
420 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||||||| ||||||||||| ||||||| | ||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
31949887 |
ctaattctttcagaaaagctgctcaaatcgataagacggaccattttcaccaatgcctatagatggaggcaattttgtcttcaacaccaacattggaggt |
31949788 |
T |
|
| Q |
421 |
gcacaaagatagacaaccctattcttagctgctcctgtgacacctaatttgatct |
475 |
Q |
| |
|
||||| ||||| |||||| |||| || ||||||| |||||||| | |||||||| |
|
|
| T |
31949787 |
gcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatct |
31949733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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