View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4224_low_1 (Length: 1174)
Name: NF4224_low_1
Description: NF4224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4224_low_1 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 33 - 742
Target Start/End: Original strand, 928476 - 929174
Alignment:
| Q |
33 |
tgctggtgtaaggttccccc---cagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgt |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928476 |
tgctggtgtaaggttcccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgt |
928575 |
T |
|
| Q |
130 |
gatttggttcaaatcaatgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacagaattacttgtgtttcttttatgagttatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
928576 |
gatttggttcaaatcaatgatttcttctttgccacatggttttgaagaaataaaagtttcctccatcacagaattacttttgtttcttttatgagttatt |
928675 |
T |
|
| Q |
230 |
ttgaggctatttatatataaagtcatggagttgnnnnnnnnnnnnctagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagg |
329 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928676 |
ttgaggctatttata----aagtcatggagttgaaaaaagaaaaactagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagg |
928771 |
T |
|
| Q |
330 |
gtattaaggggattccaagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttattgggatccaaatcaatgttnnnnn |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
928772 |
gtattaaggggattccaagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttaatgggatccaaatcaatgttaaaaa |
928871 |
T |
|
| Q |
430 |
nntagggtcaaatagtgaaacattatcatatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaa |
529 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928872 |
aatagggttaaatagtgaaacat-----tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaa |
928966 |
T |
|
| Q |
530 |
ccaagtaacatcccaaatgaacaatgcacttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactg |
627 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928967 |
ccaagtaacatcccaaatgaacaatgcacttaaa---acattcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactg |
929063 |
T |
|
| Q |
628 |
gaatggaacatccacaaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagcaagcaac |
727 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
929064 |
gaatggaacatccacaaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgact----agcaac |
929159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 983 - 1166
Target Start/End: Original strand, 929746 - 929929
Alignment:
| Q |
983 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
1082 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
|
| Q |
1083 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgagagcacaggttctg |
1166 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgataccacaatgttgcaaaaattgagagcacgggttctg |
929929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 926145 - 926324
Alignment:
| Q |
19 |
gatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
926145 |
gatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtctgccacaccattacatcatcaaggtcagaaagattaaag |
926244 |
T |
|
| Q |
119 |
gatcggagtgtgatttggttcaaatcaatgat---ttcttctttggcacatggttttgaagaaataaaagtttcctccat |
195 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
926245 |
gatcggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccat |
926324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 935598 - 935740
Alignment:
| Q |
19 |
gatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |
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| T |
935598 |
gatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaa |
935697 |
T |
|
| Q |
119 |
gatcggagtgtgatttggttcaaatcaatgatttcttctttgg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
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| T |
935698 |
gatcggagtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 939387 - 939605
Alignment:
| Q |
19 |
gatgccttggtctttgctggtgtaaggttccccc---cagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagatta |
115 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||| | |
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| T |
939387 |
gatgccttgttctttgctggtgtatggttcccaagagcagaacttggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatga |
939486 |
T |
|
| Q |
116 |
aaggatcggagtgtgatttggttcaaatcaatgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacaga--attacttgtgtt |
213 |
Q |
| |
|
|| | |||||||||||||||||||||||||||| ||| ||| ||| ||| |||||| ||||||||||||||||||||||| ||||| | ||||||||| |
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| T |
939487 |
aaaggtcggagtgtgatttggttcaaatcaatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataacagaacaacacttgtgtt |
939586 |
T |
|
| Q |
214 |
tcttttatgagttattttg |
232 |
Q |
| |
|
|||||| ||||||| |||| |
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|
| T |
939587 |
tcttttctgagttaatttg |
939605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 735 - 819
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
735 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
819 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 814 - 893
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
814 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
893 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 924144 - 924287
Alignment:
| Q |
53 |
cagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgattt |
152 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||||||||| || |||||||||||||||| | | |||||| | | |
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|
| T |
924144 |
cagaacttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctct |
924243 |
T |
|
| Q |
153 |
cttctttggcacatggttttgaagaaataaaagtttcctccatc |
196 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||| ||||||| |
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|
| T |
924244 |
cttctttggcacctggtttggaagaaatagaagttatctccatc |
924287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 792 - 888
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
792 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
887 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
|
| Q |
888 |
t |
888 |
Q |
| |
|
| |
|
|
| T |
1201514 |
t |
1201514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 735 - 791
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
735 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
791 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 936 - 970
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
936 |
ataaccgtttaacggtttagtcctcgattccatcc |
970 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1092 - 1154
Target Start/End: Complemental strand, 24981 - 24919
Alignment:
| Q |
1092 |
taaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgaga |
1154 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||||||| |||||||| || ||||| |
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|
| T |
24981 |
taaatgtgagcatttcctatctttcttaccacctttgataccacagtgttgcaataaatgaga |
24919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 46648422 - 46648477
Alignment:
| Q |
57 |
acttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaaga |
112 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
46648422 |
acttggccactttttcatcactagtccacaccaaaacatcatcaagatcagaaaga |
46648477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 46656750 - 46656839
Alignment:
| Q |
57 |
acttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaa |
146 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||| ||||||||||| ||||||||| ||| || ||| || | ||||||| |||| |||| |
|
|
| T |
46656750 |
acttggccacttttgcatcactagtccacaacataacatcatcaagatcagaaagactaatgggtcgaagagagatttggctcaagtcaa |
46656839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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