View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4224_low_4 (Length: 290)
Name: NF4224_low_4
Description: NF4224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4224_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 25175282 - 25175009
Alignment:
| Q |
1 |
gaagagcaagaaaagaaagttgaaccaaaagttcaacaaccaaagataccattaccaaacaatattgtaagacctgaacaaattctttttaggtatccat |
100 |
Q |
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| T |
25175282 |
gaagagcaagaaaagaaagttgaaccaaaagttcaacaaccaaagataccattaccaaacaatattgtaagacctgaacaaattctttttaggtatccat |
25175183 |
T |
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| Q |
101 |
cacaaaatgcaacaagtagaagaagaaattttagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcagaagtttttca |
200 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25175182 |
cacaaaatgcaacaagtagaaggagaaatttgagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcagaagtttttca |
25175083 |
T |
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| Q |
201 |
aaatgagttcactagtaaaagaaacattgaacattttaagaaaggagagagttctttgtattatggtttatcat |
274 |
Q |
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| T |
25175082 |
aaatgagttcactagtaaaagaaacattgaacattttaagaaaggagagagttctttgtattatggtttatcat |
25175009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 29592005 - 29591908
Alignment:
| Q |
93 |
gtatccatcacaaaatgcaacaagtagaagaagaaattttagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | ||| |||| |||||| ||||| | |||||| ||||||||||| ||||||||| |
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| T |
29592005 |
gtatccatcacaaaatgcaacaagtagaagaagaaatttcaccgggaagaaattggatgtatatggcgatttagaacaaaaagctaagaatttatcag |
29591908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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