View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4224_low_5 (Length: 257)
Name: NF4224_low_5
Description: NF4224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4224_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 30877547 - 30877787
Alignment:
| Q |
17 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaa |
116 |
Q |
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| T |
30877547 |
actaaccttcaaagcacctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttctgcctcactatgattcttcaaa |
30877646 |
T |
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| Q |
117 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaac |
216 |
Q |
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| T |
30877647 |
gcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggttcctctacaagctcccctctctccctatccaaaaccagagagaaac |
30877746 |
T |
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| Q |
217 |
ttgaaccatacccacttccaattacctcattgtttacttca |
257 |
Q |
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| T |
30877747 |
ttgaaccatacccacttccaattacctcattgtttacttca |
30877787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 39332728 - 39332933
Alignment:
| Q |
33 |
cctggaatgacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctct |
132 |
Q |
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| T |
39332728 |
cctggaataacactacgaagtgtatcaagatgtgaattaattcttgctcttctccttctttctgcttcactatgattcttcaaagcttcaatacttctct |
39332827 |
T |
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| Q |
133 |
ctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccact |
232 |
Q |
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| T |
39332828 |
c---aggtgatacaccctttctttccaatttcacagctgcctccacaagctctcctttttctctatctaaaaccagtgaagaagatgaaccatatccatt |
39332924 |
T |
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| Q |
233 |
tccaattac |
241 |
Q |
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|||| |||| |
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| T |
39332925 |
tccatttac |
39332933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 30203571 - 30203705
Alignment:
| Q |
104 |
atgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaa |
203 |
Q |
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| T |
30203571 |
atgattcttcaaagcttcaatacttctctc---aggtgacacaccctttctttctaatttcacagttgcctccacaaactctcctttttctctatccaaa |
30203667 |
T |
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| Q |
204 |
accagagagaaacttgaaccatacccacttccaattac |
241 |
Q |
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| T |
30203668 |
accagcgaagaagatgaaccatatccatttccatttac |
30203705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 12102483 - 12102677
Alignment:
| Q |
41 |
gacacaacgaagagtatcaagatgtgcattaatcctagctcttctcctcctttcggcctcactatgattcttcaaagcttcaacacttctctctgtagtg |
140 |
Q |
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| T |
12102483 |
gacactacgaagtgtatcaagatgtaaattaattcttgctcttctcctc---tctgcttcactatgattcttcaaagcttcgatacttctccc---aggt |
12102576 |
T |
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| Q |
141 |
gacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctatccaaaaccagagagaaacttgaaccatacccacttccaatta |
240 |
Q |
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| T |
12102577 |
gacacaccctttctttctaatttcacagctgcctccacaagctctcctttttctctatccaaaaccagtgaagaagatgaaccatatccacttccattta |
12102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 17146474 - 17146603
Alignment:
| Q |
99 |
tcactatgattcttcaaagcttcaacacttctctctgtagtggacacaccctttccttccattttaacaggtgcctctacaagctcccctctctccctat |
198 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||| |||| |||||| ||||||| ||| | || |||| |
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| T |
17146474 |
tcactatgattcttcaaagcttcaatacttctctcag--gtg---acaccctttctttctaatttcacagctgcctccgcaagctctcctttttctctat |
17146568 |
T |
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| Q |
199 |
ccaaaaccagagagaaacttgaaccatacccactt |
233 |
Q |
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| T |
17146569 |
ccaaaaccagtgaagaagatgaaccatatccactt |
17146603 |
T |
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