View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4224_low_6 (Length: 236)
Name: NF4224_low_6
Description: NF4224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4224_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 45108751 - 45108855
Alignment:
| Q |
118 |
attaaagatgtttaacatttaacatcctaacttagcttatagcttagttgtgagtgtggtgaagtttgttgtcataatgttgtgatttcatgtgattagg |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45108751 |
attaaagatgtttaacatttaacaacctagcttagcttatagcttagttgtgagtgtggtgaagtttgttgtcataaagttgtgatttcatgtgattagg |
45108850 |
T |
|
| Q |
218 |
aaggt |
222 |
Q |
| |
|
||||| |
|
|
| T |
45108851 |
aaggt |
45108855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 45108632 - 45108716
Alignment:
| Q |
12 |
atgactcaaacccaaaatcaccacgatgagaaaaattatgatagttacgttgttaaagagaaagatgcatgaattaaataattaa |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45108632 |
atgactcaaacccaaaatcaccacgatgagaaaaattatgatagttacgttgttaaagagaaagatgcatgaattaaataattaa |
45108716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University