View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4225_high_10 (Length: 323)
Name: NF4225_high_10
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 36748907 - 36749218
Alignment:
| Q |
4 |
agcaaaggtactatactaaggtattaggtaatccatccattcatttctaattgtcatatttgtataaaacaaaaat-------aagtagtatatacttta |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||| |
|
|
| T |
36748907 |
agcaaaggtactatactaaggtattaggtaatccatccattcatttctaattgtcatatttgtataaaataatattgcatatgaagtagtatatacttta |
36749006 |
T |
|
| Q |
97 |
aattggagaatgccaccaaatgttattagtgcatgcattgtttaataaactaaaatatgtaagtttgcaaagggnnnnnnn-gtgtgttgtatcgacgaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36749007 |
aattggagaatgccaccaaatgttattagtgcatgcattgtttaataaactaaaatatgtaagtttgcaaagggaaaaaaaagtgtgttgtatcgacgaa |
36749106 |
T |
|
| Q |
196 |
tgtttgacttttgaacattatattagtatattttgtaaaccaaagtattctgtgcgtaaatgagaataatctcaaggtcactaatatttaacttttaaga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36749107 |
tgtttgacttttgaacattatattagtatattttgtaaactaaagtattatgtgtgtaaatgagaataatctcaaggtcactaatatttaacttttaaga |
36749206 |
T |
|
| Q |
296 |
ggttgatacttg |
307 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36749207 |
ggttgatacttg |
36749218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University