View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_high_11 (Length: 322)
Name: NF4225_high_11
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 22346525 - 22346272
Alignment:
| Q |
8 |
cagcacagagtgagaaagagtcagagataaactgagtgtgttaatgcttagattgcacttaaatagtgacatagattgcattgtatctctcttattaata |
107 |
Q |
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| T |
22346525 |
cagcacagagtgagaaagagtcagagataaactgagtgtgttaatgcttagattgcacttaaatagtgacatagattgcattgtatctctcttattaata |
22346426 |
T |
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| Q |
108 |
aattctcactctttcataaacattaattcatctctttacattttttatattgaacaatgatga-------gcaagtgttgaaatgctttgtgcttgaagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
22346425 |
aattctcactctttcataaacattaattcatctctttacattttttatattgaacaatgatgatgtgtctttgagtgttgaaatgttttgtgcttgaagc |
22346326 |
T |
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| Q |
201 |
acttgcatactgtttctcttcttctgtttgataggtatgaactatgaaccttgc |
254 |
Q |
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| T |
22346325 |
acttgcatactgtttctcttcttctgtttgataggtatgaactatgaaccttgc |
22346272 |
T |
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