View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_high_12 (Length: 293)
Name: NF4225_high_12
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_12 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 41900997 - 41901290
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
100 |
Q |
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| T |
41900997 |
ataagaagcataagttctaacccaatgccttgtcacacttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
41901096 |
T |
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| Q |
101 |
aaagctgttaacattaatttaaaa-acaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
199 |
Q |
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| T |
41901097 |
aaagctgttaatattgatttaaaaaacaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
41901196 |
T |
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| Q |
200 |
tggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttccttgnnnnnnnggggcttcttgttgttttccaaggattt |
293 |
Q |
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| T |
41901197 |
tggaagcagaatacggtcctcctttcttgacactgtgccacacttctttcagttccttgaaaaaaaggggcttctggttgttctccaaggattt |
41901290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 41895945 - 41896215
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaat---tgatgtattgggctgcaatttgaggtg |
97 |
Q |
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| T |
41895945 |
ataagaagcataagttctaacccagtgccttgtcatccttgtcctcaggatcatatgacttaggaaaaataattgatgtattgggctgcaatttgaggtg |
41896044 |
T |
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| Q |
98 |
attaaagctgttaacatta-atttaaaaaca-------atattagta------aaaacaagtgaactaccggattaagcaaggacttgtatggtttgtca |
183 |
Q |
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| T |
41896045 |
attaaagctgttaatatttgattcaaaaacagttttttatattaatataaagaaaaacaagtgaattaccggattaaggaaagacttgtatggtttgtca |
41896144 |
T |
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| Q |
184 |
tcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttc |
254 |
Q |
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| T |
41896145 |
tcgatcagcaacgtatttgaagcagaatacggtcctcctttcttgatagtgtcccacacttttttcagttc |
41896215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 41891125 - 41891246
Alignment:
| Q |
136 |
aaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgt |
235 |
Q |
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| T |
41891125 |
aaaaacatgtgcattaacggattaaggaaggacctgtatggtctggcatcaatcatcaaggtatttgaagcagaatatggacatcctttcttgacatcat |
41891224 |
T |
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| Q |
236 |
gccacacttctttcagttcctt |
257 |
Q |
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| T |
41891225 |
cccacacttcttttagttcctt |
41891246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 34454271 - 34454209
Alignment:
| Q |
168 |
cttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
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| T |
34454271 |
cttgtatggtttgtcatcaatcatcaaagtattagaagcagaatatggacctcctttcttgac |
34454209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 41885112 - 41885185
Alignment:
| Q |
154 |
ggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttctt |
227 |
Q |
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| T |
41885112 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcttttctt |
41885185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 41829544 - 41829477
Alignment:
| Q |
163 |
aaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
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| T |
41829544 |
aaggacttatatgctttgtcatcaatcatcaaagtattagaaggagaatatgagcctcctttcttgac |
41829477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 41891019 - 41891064
Alignment:
| Q |
6 |
aagcataagttctaacccaatgccttgtcacgcttgtccactggat |
51 |
Q |
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| T |
41891019 |
aagcataagttctaacccagtgctttgtcacccttgtcctctggat |
41891064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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