View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_high_13 (Length: 265)
Name: NF4225_high_13
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 35669695 - 35669873
Alignment:
| Q |
17 |
agacacttaatgcaaaattgataagaaaagcatcatgagagaacacacaatcacatgcagtgaaagggacaaaagttacaatcagggaagaagataagaa |
116 |
Q |
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| T |
35669695 |
agacacttaatgcaaaattgataagaaaagcatcatgagagaacacacaatcacatgcagtgaaagggacaaaagttacaatcagggaagaagataagaa |
35669794 |
T |
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| Q |
117 |
tatgatgctatagctttatcagaaagcctcatgaacagaaacatgcattttatatctaacatgtgtacgtgacatgtga |
195 |
Q |
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| T |
35669795 |
tatgatgctatagctttatcagaaagcctcatgaacagaaacatgcattttatatctaacatgtgtacgtgacatgtga |
35669873 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 35669895 - 35669926
Alignment:
| Q |
224 |
accaaagtaacatattattattatgacctatg |
255 |
Q |
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| T |
35669895 |
accaaagtaacatattattattatgacctatg |
35669926 |
T |
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