View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_high_15 (Length: 255)
Name: NF4225_high_15
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 43559504 - 43559269
Alignment:
| Q |
20 |
taatattaatatctcaagtgacagttttcttttcaatacaattgaaatggtatcatcactcactcaaagaaaaaagagaggaaagtaaataatatcatat |
119 |
Q |
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| T |
43559504 |
taatattaatatctcatgtgacagttttcttttcaatacaattgaaatggtatcatcactcactcaaagaaaaaagagaggaaagtaaataatatcatat |
43559405 |
T |
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| Q |
120 |
attatatagtagctctgttgcataacattttttattgatggattaaacgtggcatgtatttaagagtaggaaattcaataattgttgataggtgcaggtg |
219 |
Q |
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| T |
43559404 |
attatatagtagctctgttacataacattttttattgatggattaaacgtggcatgtatttaagagtaggaaattcaataattgttgataggtgcaggtg |
43559305 |
T |
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| Q |
220 |
aaggggcatcaactgtgatagatggtaaaagagaat |
255 |
Q |
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| T |
43559304 |
aaggggcatcaacagtgatagatggtaaaagagaat |
43559269 |
T |
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