View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4225_high_16 (Length: 249)

Name: NF4225_high_16

Description: NF4225

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4225_high_16

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 201; E-Value: 1e-110

Query Start/End: Original strand, 18 - 249

Target Start/End: Complemental strand, 41901571 - 41901337

Alignment:

Q	18	gatcttctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgtaattgataattaggcataa	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41901571	gatcttctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgtaattaataattaggcataa	41901472	T

Q	118	tattgatgatgctttagcctgtgccattggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgtaatatacataaa---a	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|
T	41901471	tattgatgatgctttagcctgtgccatcggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgttttatacataaaatca	41901372	T

Q	215	tttcctaacaactctattcgttaattaatgtgttt	249	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41901371	tttcctaataactctattcgttaattaatgtgttt	41901337	T

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Target: chr7; HSP #2

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 113 - 180

Target Start/End: Complemental strand, 41896461 - 41896394

Alignment:

Q	113	cataatattgatgatgctttagcctgtgccattggagaattgaaaaacaagctactatttgtttgggt	180	Q
		\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41896461	cataatgttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgtttgggt	41896394	T

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