View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4225_high_4 (Length: 365)

Name: NF4225_high_4
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4225_high_4
NF4225_high_4
[»] scaffold2079 (1 HSPs)
scaffold2079 (5-356)||(96-443)
[»] chr7 (2 HSPs)
chr7 (5-305)||(6241962-6242256)
chr7 (323-356)||(6241912-6241945)
[»] chr2 (7 HSPs)
chr2 (235-302)||(15641840-15641907)
chr2 (149-188)||(10850715-10850754)
chr2 (149-188)||(10878229-10878268)
chr2 (238-288)||(15622006-15622057)
chr2 (238-288)||(15643846-15643897)
chr2 (238-288)||(15652896-15652947)
chr2 (235-305)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (149-187)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (235-299)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 356
Target Start/End: Complemental strand, 443 - 96
Alignment:
Q  5 tatattgttatggtttgtatttaatcttttgaatgattggcatttttccaacttgtgcaattgagaatagtcccataatttgaaatttatattggtcacc 104  Q
    ||||||||||   ||||| ||||||||||| |||| ||| ||||||||||||||||||| ||||| |||||| ||||||||| |||| || |||||||||    
T  443 tatattgttagtttttgtctttaatcttttaaatgtttgacatttttccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacc 344  T
Q  105 taggggcaagttcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaa 204  Q
    || ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  343 tatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaa 244  T
Q  205 tattcttttatattcacnnnnnnnnatcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctac 304  Q
    ||||||||||||||||         ||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  243 tattcttttatattca-ttttttttatccatgttattttgcaagagactatttctttctccaaacttcaaagaggttttcctacaaaattgatttgctac 145  T
Q  305 accgaatggnnnnnnnnnctcttttatcttctactcaacttcttcttcatct 356  Q
    |||| ||           ||||||||||||||||| ||||||||||||||||    
T  144 accggat---ttttttttctcttttatcttctacttaacttcttcttcatct 96  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 6242256 - 6241962
Alignment:
Q  5 tatattgttatggtttgtatttaatcttttgaatgattggcatttttccaacttgtgcaattgagaatagtcccataatttgaaatttatattggtcacc 104  Q
    ||||||||||   ||||| ||||||||||| |||| ||| ||||||| |||||||| || ||||| |||||| ||||||||| |||| || ||| ||||     
T  6242256 tatattgttagtttttgtctttaatcttttaaatgtttgacattttttcaacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacg 6242157  T
Q  105 taggggcaagttcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtctgcgttccaaaa 204  Q
    || || |   |||| ||||||||||||||||||       |||| ||||||||||||| ||| ||||||||||||||||||||||| |  |||| |||||    
T  6242156 tatggacggattcgcggtacgcaatatgagaaa-------cccggttaagtatagtagactaacttaatattgcaaaaaagtagtgcccacgtttcaaaa 6242064  T
Q  205 tattcttttatattcacnnnnnnnn-atcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgcta 303  Q
    |||||||||| ||||||         |||| | ||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||    
T  6242063 tattcttttacattcactttttttttatcgttattattttgcaagagactatctctttctccaaacttcaaagaggttttcttaaaaaattgatttgcta 6241964  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 6241945 - 6241912
Alignment:
Q  323 ctcttttatcttctactcaacttcttcttcatct 356  Q
    ||||||||||||||||| ||||||||||||||||    
T  6241945 ctcttttatcttctacttaacttcttcttcatct 6241912  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 15641907 - 15641840
Alignment:
Q  235 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgct 302  Q
    |||||||||||||||| |  |||||| |||| ||||||||||| ||||||||||| |||| |||||||    
T  15641907 tgttattttgcaagaggcgttctcttcctccaagcttcaaagatgttttcctacagaatttatttgct 15641840  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
Q  149 attaagtatagtaggctatcttaatattgcaaaaaagtag 188  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10850715 attaagtatagtaagctatcttaatattgcaaaaaggtag 10850754  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
Q  149 attaagtatagtaggctatcttaatattgcaaaaaagtag 188  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10878229 attaagtatagtaagctatcttaatattgcaaaaaggtag 10878268  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 15622057 - 15622006
Alignment:
Q  238 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 288  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15622057 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15622006  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 15643897 - 15643846
Alignment:
Q  238 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 288  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15643897 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15643846  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 15652947 - 15652896
Alignment:
Q  238 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 288  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15652947 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15652896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 43724873 - 43724943
Alignment:
Q  235 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca 305  Q
    ||||||||||||||||||  ||||||||||| | ||| ||| |||||||||  ||||| | ||||||||||    
T  43724873 tgttattttgcaagagacgttctctttctccaaactttaaataggttttcccgcaaaaattatttgctaca 43724943  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
Q  149 attaagtatagtaggctatcttaatattgcaaaaaagta 187  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  16724148 attaagtatagtaaactatcttaatattgcaaaaaagta 16724110  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 10682669 - 10682732
Alignment:
Q  235 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgattt 299  Q
    ||||||||||||||| |   ||||||||||| |||||||||||| |||| |||||||||| ||||    
T  10682669 tgttattttgcaagacatgttctctttctccaagcttcaaagagatttt-ctacaaaatttattt 10682732  T

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