View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_high_8 (Length: 340)
Name: NF4225_high_8
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 28267431 - 28267772
Alignment:
| Q |
1 |
cagtattcaaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttcnnnnnnn--cctttgaaatattaaatg |
98 |
Q |
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| T |
28267431 |
cagtattcaaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttctttttttttcctttgaaatattaaatg |
28267530 |
T |
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| Q |
99 |
gacatagatttcaaagtaatcataaattatgatgtttatgcacgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacac |
198 |
Q |
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| T |
28267531 |
gacatagatttcaaagcaatcataaattatgatgtttatgcatgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacac |
28267630 |
T |
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| Q |
199 |
acacactgactgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtgg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267631 |
acacactgactgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtgg |
28267730 |
T |
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| Q |
299 |
tttgagttttttcagtgacatagcacttctactaattgatga |
340 |
Q |
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| T |
28267731 |
tttgagttttttcagtgacatagcacttctactaattgatga |
28267772 |
T |
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