View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_10 (Length: 337)
Name: NF4225_low_10
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 31735751 - 31736065
Alignment:
| Q |
16 |
aaaggaacactaacccatcgatattcaaacatttttcgtataaaaaacatgacactacaacgtctgaggcaattgtttttattctactcattccttttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735751 |
aaaggaacactaacccatcgatattcaaacatttttcgtataaaaaacatgacactgcaacgtctgaggcaattgtttttattctactcattccttttgt |
31735850 |
T |
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| Q |
116 |
tttgtactcctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatcaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735851 |
tttgtactcctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatcaag |
31735950 |
T |
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| Q |
216 |
tttttgtggtgtcatttggtgnnnnnnnnactgaactatgtcgtgaaactgatattacgatgtgttacaatcccgtgatttgtgatattgtgaccctttc |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
31735951 |
tttttgtggtgtcatttggtgttttttttactgaactatgtcgtgaaactgatattacgatgtgttacaatcccgtgatttgtgatattgtgatcccttc |
31736050 |
T |
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| Q |
316 |
ttggtcctgcctatg |
330 |
Q |
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| T |
31736051 |
ttggtcctgcctatg |
31736065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 31733073 - 31733284
Alignment:
| Q |
16 |
aaaggaacactaacccatcgatattcaaacatttttcgtataaaaaacatgacactacaacgtctgaggcaattgtttttattctactcattccttttgt |
115 |
Q |
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|||||||||||||||||| ||||||||||||| || | ||| |||||| ||||||||||| || |||||||| ||| |||||||||| |||||||||||| |
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| T |
31733073 |
aaaggaacactaacccattgatattcaaacatctt-catattaaaaacgtgacactacaa-gtgtgaggcaactgtatttattctacccattccttttgt |
31733170 |
T |
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| Q |
116 |
tttgtactc--ctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatca |
213 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| | |
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| T |
31733171 |
tttgtactgtgctgtgtggttttgcttatttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatga |
31733270 |
T |
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| Q |
214 |
agtttttgtggtgt |
227 |
Q |
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|||||||| ||||| |
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| T |
31733271 |
agtttttggggtgt |
31733284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 31733351 - 31733396
Alignment:
| Q |
285 |
atcccgtgatttgtgatattgtgaccctttcttggtcctgcctatg |
330 |
Q |
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|||||| |||||||||||||||||||| |||| | ||||||||||| |
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| T |
31733351 |
atcccgcgatttgtgatattgtgaccccttctcgatcctgcctatg |
31733396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 6498064 - 6498275
Alignment:
| Q |
16 |
aaaggaacactaacccatcgatattcaaacatttttcgtataaaaaacatgacactacaacgtctgaggcaattgtttttattctactcattccttttgt |
115 |
Q |
| |
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|||||||||||||||||| ||||||||||||| || | ||| |||||| ||||||||||| || |||||||| ||| |||||||||| |||||||||||| |
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| T |
6498064 |
aaaggaacactaacccattgatattcaaacatctt-catattaaaaacgtgacactacaa-gtgtgaggcaactgtatttattctacccattccttttgt |
6498161 |
T |
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| Q |
116 |
tttgtactc--ctgtgttgttttgcttatttggagtttttagttgtggcatttgacctttgtatgactatatgttgtgatcctgaattggagtttcatca |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| | |
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| T |
6498162 |
tttgtactctgctgtgttgttttgcttatttggagtttttatttgtggcatttgacctttgtatgacgatatgttatgatcctgaataggagtttcatga |
6498261 |
T |
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| Q |
214 |
agtttttgtggtgt |
227 |
Q |
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|||||||| ||||| |
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| T |
6498262 |
agtttttggggtgt |
6498275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 6498342 - 6498387
Alignment:
| Q |
285 |
atcccgtgatttgtgatattgtgaccctttcttggtcctgcctatg |
330 |
Q |
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|||||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
6498342 |
atcccgcgatttgtgatattgtgaccccttcttgatcctgcctatg |
6498387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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