View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4225_low_11 (Length: 329)

Name: NF4225_low_11
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4225_low_11
NF4225_low_11
[»] chr6 (3 HSPs)
chr6 (6-313)||(21480917-21481216)
chr6 (199-313)||(19700851-19700965)
chr6 (199-297)||(766903-767001)
[»] chr2 (5 HSPs)
chr2 (199-313)||(26661184-26661298)
chr2 (230-313)||(6049616-6049699)
chr2 (197-238)||(26667111-26667152)
chr2 (158-195)||(35729106-35729143)
chr2 (197-241)||(6051977-6052021)
[»] scaffold0500 (1 HSPs)
scaffold0500 (194-280)||(358-444)
[»] chr4 (3 HSPs)
chr4 (230-313)||(13894017-13894100)
chr4 (199-251)||(20856391-20856443)
chr4 (158-194)||(40049550-40049586)
[»] chr3 (1 HSPs)
chr3 (195-313)||(15762317-15762435)
[»] chr7 (5 HSPs)
chr7 (230-314)||(13331873-13331957)
chr7 (230-314)||(13342788-13342872)
chr7 (198-241)||(13323815-13323858)
chr7 (142-185)||(22707193-22707236)
chr7 (158-187)||(22689772-22689801)
[»] chr1 (3 HSPs)
chr1 (230-313)||(44305833-44305916)
chr1 (197-305)||(22893466-22893574)
chr1 (204-312)||(29845297-29845405)
[»] chr5 (3 HSPs)
chr5 (230-314)||(5672344-5672428)
chr5 (197-226)||(21635659-21635688)
chr5 (197-226)||(21643906-21643935)
[»] scaffold0586 (1 HSPs)
scaffold0586 (197-305)||(9280-9388)
[»] chr8 (3 HSPs)
chr8 (200-305)||(10637313-10637418)
chr8 (200-305)||(32718176-32718281)
chr8 (152-193)||(11923007-11923048)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 21480917 - 21481216
Alignment:
Q  6 agaaaataggatgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc 105  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21480917 agaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtgggtcaatctctctgaattctatcgcacactctc 21481016  T
Q  106 agtcacacacgttagagaggagnnnnnnnngttgcataattaaggcttaaattgtgcaacattgcacatgttagaaaaacccataaaaatcttagggggt 205  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        |||||    
T  21481017 agtcacacacgttagagaggagaaaaaaaagttgcataattaaggcttaaattgtgcaacattgtacatgttagaaaaacccataaa--------ggggt 21481108  T
Q  206 gtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaat 305  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21481109 gtttgtttgagggttacaaaaataattcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaat 21481208  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 19700851 - 19700965
Alignment:
Q  199 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 298  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| |    
T  19700851 agggggtgtttgtttgagggtaataaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtc 19700950  T
Q  299 aaggaatacattttt 313  Q
     ||||||||| ||||    
T  19700951 caggaatacaatttt 19700965  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 767001 - 766903
Alignment:
Q  199 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgc 297  Q
    |||||| ||||||||||| ||||||| |||| || ||| |||||||||| || |||| | |||| || ||||||||||||| || ||| | ||||||||    
T  767001 agggggcgtttgtttgagagttacaataatagtttctatgaatctaaggatgaaattaagtattcctctgtttggtagatgagagtaagaaaaatatgc 766903  T

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Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 26661184 - 26661298
Alignment:
Q  199 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661184 aggggatgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 26661283  T
Q  299 aaggaatacattttt 313  Q
    |||||||||||||||    
T  26661284 aaggaatacattttt 26661298  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 6049616 - 6049699
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 313  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacattttt 6049699  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 26667152 - 26667111
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaaataattcctagg 238  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  26667152 ttagggggcgtttgtttgagggttacaaaatttattcctagg 26667111  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
Q  158 tgtgcaacattgcacatgttagaaaaacccataaaaat 195  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35729143 tgtgcaatattgcacatgttagacaaacccataaaaat 35729106  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 6052021 - 6051977
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaaataattcctaggaat 241  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||    
T  6052021 ttagggggtgtttgtttgagggtttcaaaacttattccaaggaat 6051977  T

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Target: scaffold0500 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 444 - 358
Alignment:
Q  194 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 13894100 - 13894017
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 313  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacattttt 13894017  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 20856391 - 20856443
Alignment:
Q  199 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctgg 251  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  20856391 agggggtgtttgattgagggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
Q  158 tgtgcaacattgcacatgttagaaaaacccataaaaa 194  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40049586 tgtgcaatattgcacatgttagacaaacccataaaaa 40049550  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 15762435 - 15762317
Alignment:
Q  195 tcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaata 294  Q
    |||||||| ||||||||| |||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||    
T  15762435 tcttagggtgtgtttgttagagggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaata 15762336  T
Q  295 tgccaaggaatacattttt 313  Q
    |||| ||||||||||||||    
T  15762335 tgcctaggaatacattttt 15762317  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 13331957 - 13331873
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttt 314  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| |||||||||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacatttttt 13331873  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 13342872 - 13342788
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttt 314  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  |||||||||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacatttttt 13342788  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 13323815 - 13323858
Alignment:
Q  198 tagggggtgtttgtttgagggttacaaaaataattcctaggaat 241  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  13323815 tagggggtgtttgtttgagggttacaaaatttattcccaggaat 13323858  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
Q  142 taattaaggcttaaattgtgcaacattgcacatgttagaaaaac 185  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  22707236 taattaaggcttaagctgtgcaacattgcacaggttagaaaaac 22707193  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
Q  158 tgtgcaacattgcacatgttagaaaaaccc 187  Q
    ||||||||||||||||||||||||||||||    
T  22689772 tgtgcaacattgcacatgttagaaaaaccc 22689801  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 44305833 - 44305916
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 313  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | ||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacattttt 44305916  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 22893466 - 22893574
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 296  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||    
T  22893466 ttagggggtgtttgtttgagagtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T
Q  297 ccaaggaat 305  Q
     ||||||||    
T  22893566 tcaaggaat 22893574  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 312
Target Start/End: Original strand, 29845297 - 29845405
Alignment:
Q  204 gtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaagga 303  Q
    |||||||||| ||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||    
T  29845297 gtgtttgtttaagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttagga 29845396  T
Q  304 atacatttt 312  Q
    ||| |||||    
T  29845397 ataaatttt 29845405  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 5672428 - 5672344
Alignment:
Q  230 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttt 314  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  |||||||||||||||    
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacatttttt 5672344  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 21635659 - 21635688
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaa 226  Q
    ||||||||||||||||||||||||||||||    
T  21635659 ttagggggtgtttgtttgagggttacaaaa 21635688  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 21643906 - 21643935
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaa 226  Q
    ||||||||||||||||||||||||||||||    
T  21643906 ttagggggtgtttgtttgagggttacaaaa 21643935  T

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Target: scaffold0586 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 9280 - 9388
Alignment:
Q  197 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 296  Q
    |||||||||||||||||||||||   |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  |||||||||||    
T  9280 ttagggggtgtttgtttgagggtagtaaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T
Q  297 ccaaggaat 305  Q
     | ||||||    
T  9380 tccaggaat 9388  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 10637313 - 10637418
Alignment:
Q  200 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 299  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  10637313 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcc 10637412  T
Q  300 aggaat 305  Q
    ||||||    
T  10637413 aggaat 10637418  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 32718281 - 32718176
Alignment:
Q  200 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 299  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  32718281 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtct 32718182  T
Q  300 aggaat 305  Q
    ||||||    
T  32718181 aggaat 32718176  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
Q  152 ttaaattgtgcaacattgcacatgttagaaaaacccataaaa 193  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  11923048 ttaacttgtgcaatattgcacatgttagacaaacccataaaa 11923007  T

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