View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_15 (Length: 272)
Name: NF4225_low_15
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 54137443 - 54137177
Alignment:
| Q |
1 |
acaacattgaagataaccgaaaatgaagatggtaaattctgtgttttcacttgcttttttatgattcctatttgtaacataacatgtactactttatatg |
100 |
Q |
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| T |
54137443 |
acaatattgaagataaccgaaaatgaagatggtaaattctgtgttttcacttgcttttttatgatgcctttttgtaacataacatgtactactttatatg |
54137344 |
T |
|
| Q |
101 |
attcaataggtacacaaccacacttcacgttgcagaaatgggtatcctctgaacacgaacttgaaagtactaaattagaagacaagaatgagcagccaca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54137343 |
attcaataggtacacaaccacactttacgttgcagaaatgggtatcctctgaacacgaacttgaaagtactaaattagaatacaagaatgagcagccaca |
54137244 |
T |
|
| Q |
201 |
ggatagtaatagtatcaaatcatctggtacagttttcttctctcaataccaaatactagtatctctg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
54137243 |
ggatagtaatagtatcaaatcatctggtacagttttcttctctcaataccaaatactactatgtctg |
54137177 |
T |
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