View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_21 (Length: 246)
Name: NF4225_low_21
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 54137425 - 54137656
Alignment:
| Q |
1 |
cggttatcttcaatgttgtagcagctgaatggaatttgaggtccaataaagaactattaacgcgcgaagtacccatagaatatctagcacttgctaactc |
100 |
Q |
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| T |
54137425 |
cggttatcttcaatattgtagcagctgaatggaatttgaggtccaataaagaactattaacgcgcgaagtacccatagaatatctagcacttgctaactc |
54137524 |
T |
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| Q |
101 |
cagccacccctgtgaatatcaggagcattgcatcatatctgaacttataaactgaaattatgaaattgtttgagaaagcttcaataagtagaaatagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54137525 |
cagccacccctgtgaatatcaggagcattgcatcatatctgaacttataaactgaaattattaaattgtttgagaaagcttcaataagtagaaatagcat |
54137624 |
T |
|
| Q |
201 |
atgcctcgtcaataagttgttatcagcttatt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
54137625 |
atgcctcgtcaataagttgttatcagcttatt |
54137656 |
T |
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