View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_22 (Length: 245)
Name: NF4225_low_22
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_22 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25933 - 26161
Alignment:
| Q |
1 |
ccatactatgagtaagcatagagtgaatgactgatttgactaacaaagttctaccagatattgataataaagaagcatgccaagagttaa-gctttaatc |
99 |
Q |
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| T |
25933 |
ccatactatgagtaaacatagagtgaatgactgatttgactaacaaagttctaccagatattgataatagagaagcatgccaagagttaaagctttaatc |
26032 |
T |
|
| Q |
100 |
tgattctgtctgctatggattgaagatgagaagctttaggtttccctttaaagattggcacccccaagtaattgaatggaagctgaccagagttgaaacc |
199 |
Q |
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| T |
26033 |
tgattctgtctgctatggattgaagatgagaagctttaggtttccctttaaagattggcacccccaagtaattgaatggaagctgaccagagttgaaacc |
26132 |
T |
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| Q |
200 |
aagtaaattgacaatatgagataacctac |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26133 |
aagtaaattgacaatatgagataacctac |
26161 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 30220319 - 30220263
Alignment:
| Q |
119 |
ttgaagatgagaagctttaggtttccctttaaagattggcacccccaagtaattgaa |
175 |
Q |
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| T |
30220319 |
ttgaagatgagaaacttttggtttccctctgaaaataggcacccccaaataattgaa |
30220263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 17629570 - 17629626
Alignment:
| Q |
119 |
ttgaagatgagaagctttaggtttccctttaaagattggcacccccaagtaattgaa |
175 |
Q |
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| T |
17629570 |
ttgaagatgagaaacttttggtttccctctgaaaataggcacccccaaataattgaa |
17629626 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 32020717 - 32020661
Alignment:
| Q |
119 |
ttgaagatgagaagctttaggtttccctttaaagattggcacccccaagtaattgaa |
175 |
Q |
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||||||||||||| |||| ||||||||| | || || ||||||||||| |||||||| |
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| T |
32020717 |
ttgaagatgagaaacttttggtttccctctgaaaataggcacccccaaataattgaa |
32020661 |
T |
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