View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_23 (Length: 245)
Name: NF4225_low_23
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 42759883 - 42759660
Alignment:
| Q |
5 |
aaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttgaaaactaacacatctatccatatgtaatcctctttttccc |
104 |
Q |
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| T |
42759883 |
aaattccccttgcttgaatagagcacaacattagttaagggttattgaactttcgttttgaaaaccaacacatctatccatctgtaatcctctttttccc |
42759784 |
T |
|
| Q |
105 |
atgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcttcaatctt |
204 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759783 |
atgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcttcaatctt |
42759684 |
T |
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| Q |
205 |
agcagttaaacttggtgtgcatgg |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
42759683 |
agcagttaaacttggtgtgcatgg |
42759660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1401961 - 1402188
Alignment:
| Q |
1 |
ttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttgaaaactaacacatctatccatatgtaatcctctttt |
100 |
Q |
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|||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1401961 |
ttcaaaattccccttgcttgaatacaacacaacattaatcaagggctattgaactttcgttttgaaaaccaacacatctatccatatgtaatcctctttt |
1402060 |
T |
|
| Q |
101 |
tcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactcatctgtttctaaactttcttcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
1402061 |
tcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttttactcatctgtttctaaactttcttcaa |
1402160 |
T |
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| Q |
201 |
tcttagcagttaaacttggtgtgcatgg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1402161 |
tcttagcagttaaacttggtgtgcatgg |
1402188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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