View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_24 (Length: 243)
Name: NF4225_low_24
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1481578 - 1481808
Alignment:
| Q |
1 |
tcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481578 |
tcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccc |
1481677 |
T |
|
| Q |
101 |
tctttgcatgctgccatgtttatggctacattttaagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481678 |
tctttgcatgctgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttat |
1481777 |
T |
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| Q |
201 |
actcgatagcatacaaggcgttttcacaggt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1481778 |
actcgatagcatacaaggcgttttcacaggt |
1481808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49190908 - 49191138
Alignment:
| Q |
1 |
tcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
49190908 |
tcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagtatagtgagcgcaaccc |
49191007 |
T |
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| Q |
101 |
tctttgcatgctgccatgtttatggctacattttaagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttat |
200 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| ||||| |
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| T |
49191008 |
tctttgcatgccgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctggtttctatatccgttat |
49191107 |
T |
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| Q |
201 |
actcgatagcatacaaggcgttttcacaggt |
231 |
Q |
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|||||| ||||||||||||||| || ||||| |
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| T |
49191108 |
actcgacagcatacaaggcgttctcgcaggt |
49191138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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