View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_25 (Length: 239)
Name: NF4225_low_25
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_25 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 443 - 641
Alignment:
| Q |
19 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaannnnnnnngttcgttggacaagaaagttcaatcgagtatagtgtaaaacgaattc |
118 |
Q |
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| T |
443 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaattgtttttgctcgttggacaagaaagttcaatcgagtatagtataaaacgaattc |
542 |
T |
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| Q |
119 |
gtattaaacgtttttatgggtcactgtctcatgcaaattgtttcatagctccttttccatgttttttcttcatagctctttttccaaacctcaactcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
543 |
gtattaaacgtttttatgggtcactgtctcatgcaaattgtttcatagctccttttccatgttttttcttcatagctctttttccaaacctcgactcta |
641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 6242256 - 6242411
Alignment:
| Q |
19 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaannnnnnnngttcgttggacaagaaagttcaatcgag---tatagtgtaaaacgaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
6242256 |
aaaaatgaaggaataaatggaatctatttggtgggacaggttcaattttctttgctcgttggacaagaaatttcaatcgagaactatagtataaaacgaa |
6242355 |
T |
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| Q |
116 |
ttcgtattaaacgttttta-tgggtcactgtctcatgcaaattgtttcatagctcc |
170 |
Q |
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| T |
6242356 |
ttcgtattaaacgtttttaatgggtcactgtctcatccaaattgtttcatagctcc |
6242411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 6333961 - 6333862
Alignment:
| Q |
115 |
attcgtattaaacgtttttatgggtcactgtctcatgcaaattgtttcatagctccttttccatgttttttcttcatagctctttttccaaacctcaact |
214 |
Q |
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||||||||||||||||| |||||||||| |||||| |||||||| ||||| ||| |||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
6333961 |
attcgtattaaacgtttaaatgggtcactttctcatccaaattgtgtcatacctctttttccctgttttttcttcatatctctttttccaaaactcaact |
6333862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 6330676 - 6330641
Alignment:
| Q |
107 |
taaaacgaattcgtattaaacgtttttatgggtcact |
143 |
Q |
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| T |
6330676 |
taaaacgaattcgtattaaacg-ttttatgggtcact |
6330641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 6347154 - 6347119
Alignment:
| Q |
107 |
taaaacgaattcgtattaaacgtttttatgggtcact |
143 |
Q |
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| T |
6347154 |
taaaacgaattcgtattaaacg-ttttatgggtcact |
6347119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 121 - 161
Alignment:
| Q |
102 |
tagtgtaaaacgaattcgtattaaacgtttttatgggtcact |
143 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| |
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| T |
121 |
tagtataaaacgaattcgtattaaacg-ttttatgggtcact |
161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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