View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_26 (Length: 236)
Name: NF4225_low_26
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_26 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23267 - 23487
Alignment:
| Q |
1 |
aaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaagcaagaggacgtagaatt |
100 |
Q |
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| T |
23267 |
aaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaagcaagaggacgtagaatt |
23366 |
T |
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| Q |
101 |
gaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagaggttgttgaggtgttggaa |
200 |
Q |
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| T |
23367 |
gaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagaggttgttgaggtgttggaa |
23466 |
T |
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| Q |
201 |
gaaggaaccaagagttagaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
23467 |
gaaggaaccaagagttagaag |
23487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21309652 - 21309872
Alignment:
| Q |
1 |
aaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaagcaagaggacgtagaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21309652 |
aaacttcaaagacaaaccatcattgaaaacacctaaaagaggattaatcctaggaaaatgaagaggtggagtagaactccaagcaagaggacgcagaatt |
21309751 |
T |
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| Q |
101 |
gaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagaggttgttgaggtgttggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309752 |
gaagtatagacaaagttaggtgccgtgatgaagaagtaagatgaagtaccaataaaagaagtgttgttaggatagtgaagaggttgttgaggtgttggaa |
21309851 |
T |
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| Q |
201 |
gaaggaaccaagagttagaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
21309852 |
gaaggaaccaagagttagaag |
21309872 |
T |
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