View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4225_low_27 (Length: 236)
Name: NF4225_low_27
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_27 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0077 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33730323 - 33730096
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33730323 |
cagatgacgcggttgctaagccaatttttcctctatttctcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
33730224 |
T |
|
| Q |
101 |
aaaaaatacttgactatgttta------tgatcaatggcatgcataatggtattaaaagcaaccatttggtcatgatttaacatctgaatggattcgatg |
194 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
33730223 |
aaaaaatacttgactatgtttatgattatgatcaatggcatgcataatggtattaaaagcaaccatttggtcatgatttaacatctgaatagattcaatg |
33730124 |
T |
|
| Q |
195 |
tcttcgtttggaatttggactgataact |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
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|
| T |
33730123 |
tcttcgttgggaatttggactgataact |
33730096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 11036329 - 11036468
Alignment:
| Q |
4 |
atgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaacaaa |
103 |
Q |
| |
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||||||| |||||||| ||| ||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||| | | ||||||||||| |
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| T |
11036329 |
atgacgcaattgctaagacaacttttcctctatttctcaaagttagcattaatgctcgacaaataaatgttttacctgttccacccagcccatcaacaaa |
11036428 |
T |
|
| Q |
104 |
aaatacttgactatgtttatgatcaatggcatgcataatg |
143 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| |
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| T |
11036429 |
aaatacttgactctgtttatgatcaatggcattcataatg |
11036468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 24162300 - 24162437
Alignment:
| Q |
4 |
atgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaacaaa |
103 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24162300 |
atgacgcggttgctaagatagtttttcctctatttctcaaagttgccgttaatgctcgataaaggaatgttttacctgttccgcctggaccatcaacaaa |
24162399 |
T |
|
| Q |
104 |
aaatacttgactatgtttatgatcaatggcatgcataa |
141 |
Q |
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|||||||||||| | |||| |||||||| ||| ||||| |
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| T |
24162400 |
aaatacttgactctatttacgatcaatgacattcataa |
24162437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13595595 - 13595724
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| ||| |
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| T |
13595595 |
cagatgacacggtttctatgccaatttttcctctatttctcaaagttgccattaatgctcgataaatgaatgttttgcctgttctgcctggaccattaac |
13595694 |
T |
|
| Q |
101 |
aaaaaatacttgactatgtttatgatcaat |
130 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |
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| T |
13595695 |
gaaaaatacttgactctgtttacgatcaat |
13595724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 49004 - 48861
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
49004 |
cagatgacgcggttgctaagagaatttttcctctatttctcaaagttaccattagtgctcgataaaggaatgttttacttgttccgcttggaacatcaac |
48905 |
T |
|
| Q |
101 |
aa---aaaatacttgactatgtttatgatcaatggcatgcataa |
141 |
Q |
| |
|
|| ||||||||||||| | |||| |||||||| ||| ||||| |
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|
| T |
48904 |
aaaaaaaaatacttgactctatttacgatcaatgacattcataa |
48861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44194 - 44299
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
| |
|
||||||| || ||||||||| |||| | ||||||| || ||||| |||||||| ||||||||| ||||||||||| ||||| || | ||||||||||| |
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| T |
44194 |
cagatgaagccgttgctaagacaatgtctcctctacttctcaaaactgccattattgctcgatagaggaatgtttttcctgtacctccaggaccatcaac |
44293 |
T |
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| Q |
101 |
aaaaaa |
106 |
Q |
| |
|
|||||| |
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|
| T |
44294 |
aaaaaa |
44299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 201253 - 201358
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
| |
|
||||||| || ||||||||| |||| | ||||||| || ||||| |||||||| ||||||||| || |||||||| ||||| || | ||||||||||| |
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| T |
201253 |
cagatgaagccgttgctaagacaatgtctcctctacttctcaaaactgccattagtgctcgatagagcaatgtttttcctgtacctccaggaccatcaac |
201352 |
T |
|
| Q |
101 |
aaaaaa |
106 |
Q |
| |
|
|||||| |
|
|
| T |
201353 |
aaaaaa |
201358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 22305799 - 22305904
Alignment:
| Q |
1 |
cagatgacgcggttgctaagccaatttttcctctatttttcaaagttgccattaatgctcgataaaggaatgttttacctgttccgtctggaccatcaac |
100 |
Q |
| |
|
||||||| || ||||||||| ||| | ||||||| || ||||| |||||||| ||||||||| ||||||||||| ||||| || | ||||||||||| |
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|
| T |
22305799 |
cagatgaagccgttgctaagataatgtctcctctacttctcaaaactgccattattgctcgatagaggaatgtttttcctgtacctccaggaccatcaac |
22305898 |
T |
|
| Q |
101 |
aaaaaa |
106 |
Q |
| |
|
|||||| |
|
|
| T |
22305899 |
aaaaaa |
22305904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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