View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_28 (Length: 234)
Name: NF4225_low_28
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 25014293 - 25014121
Alignment:
| Q |
18 |
atatgaagaattggaattacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacat |
117 |
Q |
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| T |
25014293 |
atatgaagaattggaatcacttatggattgaaagtgattctaaaatagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacat |
25014194 |
T |
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| Q |
118 |
atggaaaaattgtctactcaaactatcctctattgaatttcataatcacacacatctaatcaaattgttgtttg |
191 |
Q |
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| T |
25014193 |
aaggaaaaattgtctactcaaactatcctcta-tgaatttcataatcacacacatctaatcaaattgttgtttg |
25014121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 33068223 - 33068068
Alignment:
| Q |
18 |
atatgaagaattggaattacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacat |
117 |
Q |
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||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
33068223 |
atatgaagaatcg-aatcacttatggattgaaagtgattctaaattagcttgcttggcgttcaagtctcctcatatagtgccttggaaacttaagaacag |
33068125 |
T |
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| Q |
118 |
atggaaaaattgtctactcaaactatcctctattgaatttcataatcacacacatcta |
175 |
Q |
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| T |
33068124 |
atggaaaaatcccctagtcaaactgtcctata-tgaatttcatgatcacacacatcta |
33068068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 19955246 - 19955338
Alignment:
| Q |
31 |
gaattacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaa |
123 |
Q |
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|||| ||||||||||||||||||||| || || ||| ||||| |||||||||| | | ||||| |||||||| || ||||| |||||||| |
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| T |
19955246 |
gaatcacttatggattgaaagtgatttaaagttggctaccttggccttcaagtctcatcacatagttccttggaagctcaagaatatatggaa |
19955338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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