View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4225_low_29 (Length: 232)

Name: NF4225_low_29
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4225_low_29
NF4225_low_29
[»] chr4 (4 HSPs)
chr4 (1-227)||(33730707-33730933)
chr4 (1-227)||(11035716-11035942)
chr4 (184-227)||(5527321-5527364)
chr4 (184-227)||(42574978-42575021)
[»] chr1 (3 HSPs)
chr1 (12-227)||(24161687-24161902)
chr1 (188-227)||(29697596-29697635)
chr1 (184-227)||(44506262-44506305)
[»] chr5 (2 HSPs)
chr5 (18-227)||(42773175-42773388)
chr5 (184-227)||(28257239-28257282)
[»] chr2 (2 HSPs)
chr2 (109-225)||(27340287-27340403)
chr2 (115-227)||(19900365-19900477)
[»] scaffold0086 (1 HSPs)
scaffold0086 (121-219)||(49332-49430)
[»] chr8 (2 HSPs)
chr8 (142-227)||(23637305-23637390)
chr8 (144-227)||(23637428-23637511)
[»] chr7 (2 HSPs)
chr7 (184-227)||(20615602-20615645)
chr7 (184-227)||(20654309-20654352)
[»] chr6 (1 HSPs)
chr6 (184-227)||(19708613-19708656)
[»] chr3 (1 HSPs)
chr3 (184-227)||(51138185-51138228)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33730707 - 33730933
Alignment:
Q  1 atgaatgtacctgaatctgcacaatttcttatgtgaattggtgacagtgttgaacctaccaaacgcaatgctatggtgaggatacctcatcaaattgcat 100  Q
    |||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33730707 atgaatgatcctgaatttgcacaatttcttatgcgaattggtgacagtgttgaacctaccaaactcaatgctatggtgaggatacctcatcaaattgcat 33730806  T
Q  101 taccatgggaaggagaacaatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33730807 taccatgggaaggagaacagtcaatacaaactcttattgatcatatttttccacaattaaatttgcatggatgggatgcatcgtatatggtcgaaagagc 33730906  T
Q  201 tataattacacttacaaatgatgatgt 227  Q
     ||||||||||||||||||||||||||    
T  33730907 cataattacacttacaaatgatgatgt 33730933  T

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Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11035942 - 11035716
Alignment:
Q  1 atgaatgtacctgaatctgcacaatttcttatgtgaattggtgacagtgttgaacctaccaaacgcaatgctatggtgaggatacctcatcaaattgcat 100  Q
    |||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  11035942 atgaatgatcctgaatttgcacaatttcttatgtgaattggtgatagtgttgaacctaccaaacccaatgatatggtgaggatacctcctcaaattgcat 11035843  T
Q  101 taccatgggaaggagaacaatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagc 200  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||| |||||||||||| ||||    
T  11035842 tcccatgggaaggagaacagtcaatacaaactcttattgatcatatttttccacaattagatttgcatggatgagatgcatcatatatggtcgaacgagc 11035743  T
Q  201 tataattacacttacaaatgatgatgt 227  Q
     |||||||||| ||||||||| |||||    
T  11035742 cataattacacctacaaatgacgatgt 11035716  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 5527321 - 5527364
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||||||| |||||||| |||||||||| |||||||||||||||    
T  5527321 tatatggttgaaagagccataattacacctacaaatgatgatgt 5527364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 42575021 - 42574978
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    ||||||||||||||||| |||||||||| || ||||||||||||    
T  42575021 tatatggtcgaaagagccataattacacctataaatgatgatgt 42574978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 24161902 - 24161687
Alignment:
Q  12 tgaatctgcacaatttcttatgtgaattggtgacagtgttgaacctaccaaacgcaatgctatggtgaggatacctcatcaaattgcattaccatgggaa 111  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| |||| ||||| |||||| ||||| |||| ||||||||||||||||||||||    
T  24161902 tgaatttgcacaatttattatgcgaattggtgacagtgttgaacctactaaacccaatgatatggtaaggatgcctcctcaaattgcattaccatgggaa 24161803  T
Q  112 ggagaacaatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataattacac 211  Q
    |  ||| | ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||| | |||||||||| |||||||||     
T  24161802 gccgaaaagtcaatacaaactcttattgatcatatttttccacaattatatttgcatggatgggatgcaccgtatacgatcgaaagagccataattacat 24161703  T
Q  212 ttacaaatgatgatgt 227  Q
     |||||||||||||||    
T  24161702 ctacaaatgatgatgt 24161687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 29697635 - 29697596
Alignment:
Q  188 tggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  29697635 tggtcgaaagagccataattacacctacaaatgatgatgt 29697596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 44506262 - 44506305
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||||||| |||||||| |||||||||| |||||||||||||||    
T  44506262 tatatggttgaaagagccataattacacctacaaatgatgatgt 44506305  T

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Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 42773388 - 42773175
Alignment:
Q  18 tgcacaatttcttatgtgaattggtgacagtgttgaacctaccaaacgcaatgctatggtgaggatacctcatcaaattgcattaccatgggaaggagaa 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  42773388 tgcacaatttcttatgtgaattggtgacggtgttgaacctaccaaacccaatgatatggtgaggatacctcctcaaattgcgttaccatgggaaggataa 42773289  T
Q  118 caatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcg----aaagagctataattacactt 213  Q
    |  ||||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| |||||||||     ||| ||| |||||||||| |    
T  42773288 cggtcaatacaaactcttattgatcatatttttccacaattagatttgcatagatgagatgcatcatatatggtctgtcaaaatagccataattacacct 42773189  T
Q  214 acaaatgatgatgt 227  Q
    ||||||||||||||    
T  42773188 acaaatgatgatgt 42773175  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 28257282 - 28257239
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  28257282 tatatggtcgaaagagccataattacacctacaaatgatgatgt 28257239  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 27340287 - 27340403
Alignment:
Q  109 gaaggagaacaatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataatta 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||    
T  27340287 gaaggagaacaatcaatacaaactcttattgatcatatttttccataattagatttgcatggatgggatgcatcgtatatggtcaaaagagccataatta 27340386  T
Q  209 cacttacaaatgatgat 225  Q
    ||| | |||||||||||    
T  27340387 cacctgcaaatgatgat 27340403  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 19900477 - 19900365
Alignment:
Q  115 gaacaatcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataattacactta 214  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||| || || ||||||| ||||||| |||||||||||||||||| |||||||||| ||    
T  19900477 gaacagtcaatgcaaactcttattgatcatatttttccacaattagatttgaatggatgagatgcattgtatatggtcgaaagagccataattacaccta 19900378  T
Q  215 caaatgatgatgt 227  Q
    |||||||||||||    
T  19900377 caaatgatgatgt 19900365  T

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Target: scaffold0086 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 49332 - 49430
Alignment:
Q  121 tcaatacaaactcttattgatcatattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataattacacttacaaat 219  Q
    ||||||||||||||||||||||||||| ||||||||||  || ||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||    
T  49332 tcaatacaaactcttattgatcatatttttccacaatttgatttgcatggatggaatgcatcgtatatagtcgaaagagccataattacacctacaaat 49430  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 23637390 - 23637305
Alignment:
Q  142 catattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  23637390 catatttttccacaattagatttgcatggatgggatgcatcatatatggtcgaaagagccataattacacctacaaatgatgatgt 23637305  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 23637428 - 23637511
Alignment:
Q  144 tattgttccacaattaaatgtgcatggatgggatgcatcgtatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||| ||||||||||| || |||||||||||||||||||||||||| |||||||||| |||| || || |||||||||||||||    
T  23637428 tatttttccacaattagatttgcatggatgggatgcatcgtatatgatcgaaagagccataactaaacctacaaatgatgatgt 23637511  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 20615645 - 20615602
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||||||| |||||||| ||||||||||||||||||||||||||    
T  20615645 tatatggttgaaagagccataattacacttacaaatgatgatgt 20615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 20654352 - 20654309
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    |||||||| |||||||| |||||||||| |||||||||||||||    
T  20654352 tatatggttgaaagagccataattacacctacaaatgatgatgt 20654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 19708656 - 19708613
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  19708656 tatatggtcgaaagagccataattacacctacaaatgatgatgt 19708613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 51138228 - 51138185
Alignment:
Q  184 tatatggtcgaaagagctataattacacttacaaatgatgatgt 227  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  51138228 tatatggtcgaaagagccataattacacctacaaatgatgatgt 51138185  T

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