View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4225_low_3 (Length: 390)
Name: NF4225_low_3
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_3 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0171 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 24940146 - 24939771
Alignment:
| Q |
1 |
tagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24940146 |
tagatccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattttgtcaaacctgtccctaatt |
24940047 |
T |
|
| Q |
101 |
cttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
24940046 |
cttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccgacacattaaacttccctgcaagctcggcagtgtctgtca |
24939947 |
T |
|
| Q |
201 |
ccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacag |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24939946 |
ccatcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggatagagtcaacag |
24939847 |
T |
|
| Q |
301 |
ctcgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgt |
376 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
24939846 |
ctcgccgccaatatcaacggcttcaccggcttcccctttcttatccaaaagtctaagaaatcttagagtctcttgt |
24939771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 25168762 - 25168390
Alignment:
| Q |
4 |
atccctaacatgatgagcaccttcacctcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaattctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||| |||| ||| ||| |
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| T |
25168762 |
atccctaacatgatgagcaccttcacctcttttcttcttttcctcttgatgctcctttgtcaccctatccatcattgtgtcaaacctatcccgaatcctt |
25168663 |
T |
|
| Q |
104 |
ttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcacca |
203 |
Q |
| |
|
|| ||| |||||||||||||||||||||| | ||||||| ||||||| |||||||| |||||||| | ||||||| ||||||| || || ||| |||||| |
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|
| T |
25168662 |
ttcagctttttattcattccataaaaatctatattcttaaaaaaccagataaaatccgacacattcaccttccctacaagctctgcggtctctgtcacca |
25168563 |
T |
|
| Q |
204 |
tcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacagctc |
303 |
Q |
| |
|
|||||| ||| || ||||| || | ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||| |
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|
| T |
25168562 |
tcttcctaatctctttaacatcgctaatatcattctcagaaccgaaagtttttttcattgtcattattgttataatgctattggtgagagtcaatagctc |
25168463 |
T |
|
| Q |
304 |
gccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaagtctaagaaatctcagagtctcttgt |
376 |
Q |
| |
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||| ||||| |||| ||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
25168462 |
gcccccaacttcaatggcttcaccggtttcccctttcttctgcaaaagtctaagaaaccttagagtctcttgt |
25168390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 38808873 - 38808935
Alignment:
| Q |
249 |
aagtttttctcattgtcatccttgttataatgctattggttagagtcaacagctcgccgccaa |
311 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| || |||| |||||||| |||| |
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| T |
38808873 |
aagttttactcattgtcatccttgttatgattctattggtgtgaatcaagagctcgccaccaa |
38808935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 352
Target Start/End: Original strand, 11224 - 11467
Alignment:
| Q |
103 |
tttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcacc |
202 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| | |||| |||| | |
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| T |
11224 |
tttaagccttttatgtattccttgtaaatccaaattcttgcaaacccaaataaaatctgacacattaaacgtccctccaagctctaaaatgtccttcagc |
11323 |
T |
|
| Q |
203 |
atcttccgaatgtccttaacttcacaaatatcattcttagaaccaaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacagct |
302 |
Q |
| |
|
|||| || ||| || | |||||||| ||||||| | ||||| | ||||| || |||| ||| |||| ||||||| ||||||| ||||| || |||| |
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|
| T |
11324 |
atctccctaatttcttcaacttcac---tatcattttcagaac---atgttttacttattgccattcttgctataatgttattggtgagagttaagagct |
11417 |
T |
|
| Q |
303 |
cgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaagt |
352 |
Q |
| |
|
||||||| ||||||||||| | || ||||| ||| |||| ||||||||| |
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|
| T |
11418 |
cgccgccgacatcaacggcgttgccagcttctcctatcttctgcaaaagt |
11467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 19151 - 18967
Alignment:
| Q |
32 |
cttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaattcttttaagccttttattcattccataaaaat |
131 |
Q |
| |
|
||||||||| ||||| || ||||||| || |||| |||||||||| |||||||||||| ||| ||| |||||||||||| || | ||| | | || |
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|
| T |
19151 |
cttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaacctctccataaccactttaagccttttgttaaatccttgcatat |
19052 |
T |
|
| Q |
132 |
ccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaagctcggcagtgtctttcaccatcttccgaatgtc |
216 |
Q |
| |
|
|| |||||||| |||||||||||||||| |||| ||||||| |||||| |||||| || | |||| ||||||||||| |||||| |
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|
| T |
19051 |
cccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtc |
18967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 10801 - 10688
Alignment:
| Q |
247 |
aaaagtttttctcattgtcatccttgttataatgctattggttagagtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgc |
346 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||| || ||| |||| ||| ||| | |||||||| ||||| ||||||||||||||||| ||| |
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|
| T |
10801 |
aaaagttttactcatggtcatccttgttatgattctattcgtgagattcaagagcaagccactgacatcaacagcttcgccggcttcccctttcttctgc |
10702 |
T |
|
| Q |
347 |
aaaagtctaagaaa |
360 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
10701 |
agaagtctaagaaa |
10688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 24561 - 24409
Alignment:
| Q |
31 |
tcttttcttcttttcctctagatgctcttttgtcactctctccatcattgtgtcaaacctgtccctaat-tcttttaagccttttattcattccataaaa |
129 |
Q |
| |
|
|||||||||| |||||||| ||||||| || | || ||||| ||||||||||| ||| ||| | ||| ||||||| ||||||| || | ||| | || |
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|
| T |
24561 |
tcttttcttcatttcctcttgatgctcccttatgacactctcaatcattgtgtcgaacatgttcataagctctttta-gccttttgttaaatccttgcaa |
24463 |
T |
|
| Q |
130 |
atccaaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
183 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||| |||||||| |||| |||| |
|
|
| T |
24462 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaactgccctccaag |
24409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 374
Target Start/End: Complemental strand, 18938 - 18815
Alignment:
| Q |
251 |
gtttttctcattgtcatccttgttataatgctattggttagagtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaa |
350 |
Q |
| |
|
||||| ||||||| ||| |||| || || ||||| || ||| |||| |||||||||||||||| ||| || || | ||||||||||| | ||||||| |
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|
| T |
18938 |
gttttactcattgccatagttgtgatgattctattcgtgagattcaagagctcgccgccaacattaacagcctcgcgagcttccccttttgtctgcaaaa |
18839 |
T |
|
| Q |
351 |
gtctaagaaatctcagagtctctt |
374 |
Q |
| |
|
|||||||||| |||| ||| |||| |
|
|
| T |
18838 |
gtctaagaaacctcatagtttctt |
18815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 10909 - 10859
Alignment:
| Q |
133 |
caaattcttacaaaaccaaataaaatctgacacattaaacttccctgcaag |
183 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||| | |||||||||||||||| |
|
|
| T |
10909 |
caaattcttacaaaaccaaatatattctaacatactaaacttccctgcaag |
10859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 24338 - 24222
Alignment:
| Q |
260 |
attgtcatccttgttataatgctattggttagagtcaacagctcgccgccaacatcaacggcttcaccggcttcccctttcttatgcaaaagtctaagaa |
359 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||||| ||| ||||| | ||||||||||| || ||||||| |||||| ||||| | ||||| |||||| |
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|
| T |
24338 |
attgtcgtccttgtcataattctatttgttagacgcaagagctctgcaccaacatcaaccgcctcaccggtttccccattcttcttcaaaacattaagaa |
24239 |
T |
|
| Q |
360 |
atctcagagtctcttgt |
376 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
24238 |
gcctcaaagtctcttgt |
24222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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