View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_6 (Length: 358)
Name: NF4225_low_6
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 6856523 - 6856196
Alignment:
| Q |
13 |
attatactgcagaaagattactggaccaaaagtagagagaaaaaactaataattaacgcttcatatttatttattataatgtggcaaaaacaaaaatact |
112 |
Q |
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| T |
6856523 |
attataatgcagaaagattactggaccaaaagtagacagaaaaaactaataattaacgcttcatatttatttattataatgtggcaaaaacaaaaatact |
6856424 |
T |
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| Q |
113 |
tcttgatnnnnnnntagaaaggcatccaagtctgccacgccagatagtcaaccattgggagttaacaagttctgaaatcacctggctttccttatggata |
212 |
Q |
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| T |
6856423 |
tcctgataaaaaaatagaaaggcatccaagtctgccacgccagatagtcaaccattgggagttaacaagttctgaaatcacctggctttccttatggata |
6856324 |
T |
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| Q |
213 |
ggaaggacataaattcaaaactttgtttaaattaaaagagatttatgtcatcttttatttaaacacgtatgtccaaaattaaattcttacctaggaattc |
312 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||| |
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| T |
6856323 |
ggaaggac--aaattcaaaactttgtttaaattagaagagatttatgtcatctcttatttaaacacgtatgttcaaaattaaattccaacgtaggaattt |
6856226 |
T |
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| Q |
313 |
gtttaagttaaaagaaatttgtgtcatatc |
342 |
Q |
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| T |
6856225 |
ggttaagttaaaagagatttgtgtcgtatc |
6856196 |
T |
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