View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_7 (Length: 350)
Name: NF4225_low_7
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 43360890 - 43361214
Alignment:
| Q |
17 |
actattgtcattggaggaaaacttgcagtactctaacatgtcatgtcctttcgaaggtgatgttgtannnnnnnaatagtgttaattgttgtgtattgat |
116 |
Q |
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| T |
43360890 |
actattgtcattggaggaaaacttgcagtactctaacatgtcatgtcctttcgaaggtgatgttgtatttttttaatagtgttatttgttgtgtattgat |
43360989 |
T |
|
| Q |
117 |
attcaagctgtgatttacctcgaagtatttgagccatgattgtgttagttaaacatagagtggaaattaccacatttgatctttgctttatgcattattg |
216 |
Q |
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| T |
43360990 |
attcaagctgtgatttacctcgaagtatttgagccatgattgtgttagttaaacatagagtggaaattaccacatttgatctttgctttatgtattattg |
43361089 |
T |
|
| Q |
217 |
ctcacttgttggcaactgaagaagtagttaaca--atgacataaacatacatgattttgaaagctaacaatatgctgtaacttttttagaattaagttaa |
314 |
Q |
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| T |
43361090 |
ctcacttgttggcaactgaagaagtagttaacaatatgacataaatatacatgattttgaaagctaacaatatgctgtaacttttttagaattaagttaa |
43361189 |
T |
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| Q |
315 |
attaaatagttcaccaattattcat |
339 |
Q |
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| T |
43361190 |
attaaatagttcaccaattattcat |
43361214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 49414212 - 49414126
Alignment:
| Q |
102 |
ttgttgtgtattgatattcaagctgtgatttacctcgaagtatttgagccatgat-tgt--gttagttaaacatagagtggaaatta |
185 |
Q |
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|||||||||| |||||||||||||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||| |
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| T |
49414212 |
ttgttgtgtaatgatattcaagctgtgatttacttcaaagtatttgagacatgatgtgttaattagttcgacatagagtggaaatta |
49414126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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