View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4225_low_8 (Length: 348)
Name: NF4225_low_8
Description: NF4225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4225_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23675917 - 23675754
Alignment:
| Q |
1 |
tgtgaaaaatcgataggtgtctagagagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagat |
100 |
Q |
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| T |
23675917 |
tgtgaaaaatcgataggtgtctagagagaaattttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagat |
23675818 |
T |
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| Q |
101 |
cacaaaacaaagtctctatttattccattgatcatcatcaatagtttaaaagtaaacataactt |
164 |
Q |
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| T |
23675817 |
cacaaaacaaaatctctatttattccattgatcatcatcaatagtttaaaagtaaacataactt |
23675754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 23675673 - 23675570
Alignment:
| Q |
246 |
tgatagtggagaaa-gactccatattacacaacaaaagataaagnnnnnnnnttcataactagtattttcccactcctttgtcctattcataatccaacc |
344 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
23675673 |
tgatagtggagaaaagactccatattacacaacaaaagataaagaaaaaaaattcataactagtattttccgactcctttgtcctattcataatcccacc |
23675574 |
T |
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| Q |
345 |
tcat |
348 |
Q |
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|||| |
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| T |
23675573 |
tcat |
23675570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 26457559 - 26457709
Alignment:
| Q |
14 |
taggtgtctagagagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagatcacaaaacaaagt |
113 |
Q |
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| T |
26457559 |
taggtgcctaaagagaaattttcgtgtgggtttgagtcaagtgtatgagcttgcataaatgaactcttataccgatcatttggagatcacaaaacaaatt |
26457658 |
T |
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| Q |
114 |
ctctatttattccattgatcatcatcaatagtttaaaagtaaacataactt |
164 |
Q |
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||||| |||||||||||| |||||| || |||||||||||||||||||| |
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| T |
26457659 |
gtctatgtattccattgattatcatcggtaatttaaaagtaaacataactt |
26457709 |
T |
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