View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-11 (Length: 621)

Name: NF4226-Insertion-11
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-11
NF4226-Insertion-11
[»] chr1 (1 HSPs)
chr1 (5-621)||(590706-591322)


Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 5 - 621
Target Start/End: Original strand, 590706 - 591322
Alignment:
Q  5 acagattatacatgtcaacatctaaatacattggagtctaagcccgacgcttttagtacccgacttcatggtgacaatgtcagtatcgggagtgatcaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  590706 acagattatacatgtcaacatctaaatacattggagtctaagctcgacgcttttagtacccgacttcatggtgacaatgtcagtatcgggagtgatcaaa 590805  T
Q  105 ctgtcaaaaacttcgatgctgtttcatttgttggaaatgctgctactgcagctatagagcagcaatggaatgtctatccaaaatatatgaagaacagtga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  590806 ctgtcaaaaacttcgatgctgtttcatttgttggaaatgctgctactgcagctatagagcagcaatggaatgtctatccaaaatatatgaagaatagtga 590905  T
Q  205 tactcgaacgtcgaaaattgaggcttcattgaacagtgacttgtatttaacacctaagaagaaaaatgaaggggaattctggttttcagatgatgctact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  590906 tactcgaacgtcgaaaattgaggcttcattgaacagtgacttgtatttaacacctaagaagaaaaatgaaggggaattctggttttcagatgatgctact 591005  T
Q  305 agtttcttgatctcggaacattgtaaaagtacatcgtctgattttgaaccacattggttgggagctgaaaaatctcagccttggtggcgcactacaggaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  591006 agtttcttgatctcggaacattgtaaaagtacatcgtctgattttgaaccacattggttgggagctgaaaaatctcagccttggtggcgcactacaggaa 591105  T
Q  405 aagacgatttggcttccttggttgctaagaaatcatttgagtatgtcgagaactgcgatctcccagagccaaacattaagccttttaggaaaatacatac 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  591106 aagacgatttggcttccttggttgctaagaaatcatttgagtatgtcgagaactgcgatctcccagagccaaacattaagccttttaggaaaatacatac 591205  T
Q  505 tcttcagccaagagaaactgacaaggaggagaatcaagtgtcgtccttgaaccaaaaattggagatgtgttcttccgattcgaatgcttgtacgtctaca 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  591206 tcttcagccaagagaaactgacaaggaggagaatcaagtgtcgtccttgaaccaaaaattggagatgtgttcttctgattcgaatggttgtacgtctaca 591305  T
Q  605 accttgacttctggctg 621  Q
    |||||||||||||||||    
T  591306 accttgacttctggctg 591322  T

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